PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05977-snap-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 220aa    MW: 24981 Da    PI: 6.3092
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05977-snap-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.21.5e-0956915490
                                       FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                                               ++  trtgC+a+++   + +g+w v++++ eHnHe+a
  maker-scaffold05977-snap-gene-0.21-mRNA-1 56 NKLDTRTGCQARIRFDIK-NGNWSVSHFNDEHNHEFA 91
                                               6789************99.****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-75691IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDFSENALDT AGDNEKSENH ENVSSEEEAY NLYNEYALNK GFGIRKGVTQ KIDHFNKLDT  60
RTGCQARIRF DIKNGNWSVS HFNDEHNHEF ASPEERCNFR LGRKVLSTHG TIIETMVSSG  120
IKATKSYLFL SKELGGVNNV GVFHQIMKTS MTLIQVAEFY EEKVVEMCKN EINEDFRCKN  180
GVPSKIMRYG GILNHAAKVY TITLFKMFEE EFNSSGGSSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925132.18e-54protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9F5N92e-39A0A2N9F5N9_FAGSY; Uncharacterized protein
STRINGXP_004305835.18e-30(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-11FAR1-related sequence 5