PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06042-snap-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 205aa    MW: 23844.7 Da    PI: 7.1653
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06042-snap-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.56.9e-2131116190
                                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 
                                                ++YneYA + GFs+rk  ++k   +    +r+f Csk+g++e e+   + ++ ++  trtgC+a+++ 
  maker-scaffold06042-snap-gene-0.11-mRNA-1  31 NMYNEYALNKGFSIRKGVTRKI--DVVLRQREFLCSKQGHKEFEDPC-DYKKFNKLDTRTGCQARIRF 95 
                                                58***************98887..9999**************99988.89999*************** PP

                                       FAR1  69 kkekdgkwevtkleleHnHela 90 
                                                  + +g w v++++ eHnHe+a
  maker-scaffold06042-snap-gene-0.11-mRNA-1  96 DIK-NGIWSVSHFNDEHNHEFA 116
                                                *99.****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-1832116IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDFLENALDT AGDNEKSENH ENVSSEEEAY NMYNEYALNK GFSIRKGVTR KIDVVLRQRE  60
FLCSKQGHKE FEDPCDYKKF NKLDTRTGCQ ARIRFDIKNG IWSVSHFNDE HNHEFASPEE  120
RCNLRSGRKV LSTHGTIIET TVSSGIKATK LYQIREKWCP AFNVDFFSAK MKSTQRSEST  180
NSVFHQIMKT SMTLIQVVEF YEEKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925132.19e-66protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9F5N96e-59A0A2N9F5N9_FAGSY; Uncharacterized protein
STRINGXP_008338042.16e-37(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-10FAR1-related sequence 5