PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06123-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 911aa    MW: 102633 Da    PI: 6.1831
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06123-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.92.1e-128484661374
                                           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64 
                                                    l++lL ecA +v +g++e+a+  L+++s+laspdgd+mqR+aayft+ALa r+++ +++l kal
  maker-scaffold06123-augustus-gene-0.16-mRNA-1  48 LIRLLQECAVHVGTGSTENANLGLEHISHLASPDGDTMQRIAAYFTQALADRMLKGWPGLHKAL 111
                                                    5789************************************************************ PP

                                           GRAS  65 ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                                                    ++++ s  ++see+ ++klf+e +P+lk+++l++NqaI ea+ege+ vHiiD+   +++QW++L
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 112 NSTKLS--SVSEEVLVQKLFFEFCPFLKVAYLITNQAIIEAMEGEKVVHIIDLYSIEPAQWINL 173
                                                    999998..59****************************************************** PP

                                           GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                                                    lq +++Rpegpp+l+iTg+++    +k  le+++ +La+ A++l++pf+fn+ ++ +le+l+le
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 174 LQMISARPEGPPHLKITGIHE----QKVVLEQMALQLAEEADRLDIPFQFNP-IVCKLENLDLE 232
                                                    *********************....9**************************.5788******* PP

                                           GRAS 193 eLrvkpgEalaVnlvlqlhrll.......................................... 214
                                                    +L vk+gEalaV+++l+lh+ll                                          
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 233 NLGVKNGEALAVSSILKLHSLLatdddmlrrdspmalknlqkvfhnrqqplrefldkdlinlyl 296
                                                    **************************************************************** PP

                                           GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                                                                s++ + + +++L+ ++slsPk++v++eqeadhn+ +++er+ +al++y+alf
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 297 asldststssPVSLCASPKMESFLSSIWSLSPKLMVITEQEADHNGFTLMERVKKALNFYAALF 360
                                                    *****99966444444447889****************************************** PP

                                           GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                                    d+l+++++r+  er+k+E++l+g+ei+n++acegaer+erhe+lekW +rle aGF+ vp+s++
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 361 DCLDSTVSRAPIERHKIEKMLFGEEIKNIIACEGAERKERHEKLEKWISRLELAGFGRVPFSYY 424
                                                    **************************************************************** PP

                                           GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                       qa ++l+  +  gy+ +ee+g+lv++Wk+ pL+svSaWr
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 425 GRLQAGRMLQISNCGGYNFKEENGCLVICWKSIPLFSVSAWR 466
                                                    *************9***************************8 PP
2GRAS298.81.3e-915228701321
                                           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64 
                                                    l+elL ecA +v+++ l+ +++ L+++s la p+g+++qR+a+yf eA a r+++s ++l kal
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 522 LIELLGECASHVTARCLHSVNTRLEHIS-LAPPKGTAIQRIASYFIEAFADRMLKSFTGLHKAL 584
                                                    5789***********************8.689******************************** PP

                                           GRAS  65 ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                                                    ++ + s  ++see+ ++klf+e +P+lk ++l++N+aI+ea+ege+ vHiiD+   ++ QW+ L
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 585 NSMKIS--SVSEEILVQKLFYEHCPFLKYAYLITNRAIMEAMEGEKVVHIIDLYPVEPEQWIRL 646
                                                    999998..5******************************************************* PP

                                           GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                                                    lqaL+ R+eg+p+l+iTg+++    ++e l ++  +L++ A++l +pf+fn+ +++++e+l++e
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 647 LQALSVRQEGAPHLKITGIHE----QNEVLVRMDLQLKEEADRLSIPFRFNP-IVSTIENLDIE 705
                                                    *********************....9**************************.79********* PP

                                           GRAS 193 eLrvkpgEalaVnlvlqlhrll....................................desvsl 220
                                                    +L +k+gEalaV + lqlh+ll                                    + s+s 
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 706 SLGIKTGEALAVISLLQLHSLLaidevvvrrnqqslqqfletdlnhlyiasassstssELSLSA 769
                                                    *****************************************************99977445555 PP

                                           GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                                                    + + +++L+ + + sPk++v++eqea+hn+ ++ er+ +a+++y+alfd+l+++ + +  e++k
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 770 SPKMESFLSSLLRFSPKLMVITEQEANHNGFTLIERVHNAMKFYAALFDCLDSTKSMAPIEQQK 833
                                                    557888*********************************************99988888***** PP

                                           GRAS 285 vErellgreivnvvacegaerrerhetlekWrerlee 321
                                                    vE++l+g+ei+n+vac gaer+erhe+lekW  +l++
  maker-scaffold06123-augustus-gene-0.16-mRNA-1 834 VEKMLFGEEIKNIVACDGAERKERHEKLEKWILWLDT 870
                                                    *******************************877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.84622446IPR005202Transcription factor GRAS
PfamPF035147.3E-12648466IPR005202Transcription factor GRAS
PROSITE profilePS5098541.222496903IPR005202Transcription factor GRAS
PfamPF035144.6E-89522870IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MAGAVQEDGS SVTSSSHESS SWMQLSPGLG SPSPWIRELG SEERGLCLIR LLQECAVHVG  60
TGSTENANLG LEHISHLASP DGDTMQRIAA YFTQALADRM LKGWPGLHKA LNSTKLSSVS  120
EEVLVQKLFF EFCPFLKVAY LITNQAIIEA MEGEKVVHII DLYSIEPAQW INLLQMISAR  180
PEGPPHLKIT GIHEQKVVLE QMALQLAEEA DRLDIPFQFN PIVCKLENLD LENLGVKNGE  240
ALAVSSILKL HSLLATDDDM LRRDSPMALK NLQKVFHNRQ QPLREFLDKD LINLYLASLD  300
STSTSSPVSL CASPKMESFL SSIWSLSPKL MVITEQEADH NGFTLMERVK KALNFYAALF  360
DCLDSTVSRA PIERHKIEKM LFGEEIKNII ACEGAERKER HEKLEKWISR LELAGFGRVP  420
FSYYGRLQAG RMLQISNCGG YNFKEENGCL VICWKSIPLF SVSAWRRHSS FRREPPSFVT  480
WAGNLKLVVY LINSKEQPIE HSLDHHTPWL SSPRSVEGGL QLIELLGECA SHVTARCLHS  540
VNTRLEHISL APPKGTAIQR IASYFIEAFA DRMLKSFTGL HKALNSMKIS SVSEEILVQK  600
LFYEHCPFLK YAYLITNRAI MEAMEGEKVV HIIDLYPVEP EQWIRLLQAL SVRQEGAPHL  660
KITGIHEQNE VLVRMDLQLK EEADRLSIPF RFNPIVSTIE NLDIESLGIK TGEALAVISL  720
LQLHSLLAID EVVVRRNQQS LQQFLETDLN HLYIASASSS TSSELSLSAS PKMESFLSSL  780
LRFSPKLMVI TEQEANHNGF TLIERVHNAM KFYAALFDCL DSTKSMAPIE QQKVEKMLFG  840
EEIKNIVACD GAERKERHEK LEKWILWLDT IVMGIASQKR MDVWLSTGIR FPYIQFQPGR  900
SDDETEIASS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-57318641381Protein SCARECROW
5b3h_D2e-57318641381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768234e-95AK376823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3137D09.
GenBankAK3768284e-95AK376828.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3137F09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921783.10.0scarecrow-like protein 3
RefseqXP_023921784.10.0scarecrow-like protein 3
RefseqXP_023921785.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9EBS70.0A0A2N9EBS7_FAGSY; Uncharacterized protein
STRINGVIT_13s0019g01220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]