PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06212-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 290aa    MW: 32392.5 Da    PI: 7.7667
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06212-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.8e-17215249135
                                           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                                    C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  maker-scaffold06212-augustus-gene-0.16-mRNA-1 215 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 249
                                                    *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.6E-15209263IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.372209245IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15210273No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13213247IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.11E-11214261No hitNo description
PfamPF003205.7E-15215249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDFCRNVSVS GEYQQEQVLS PPCSKLGDLS TSLDDLFSAQ NTEVDVSLEW LSVFVEDCLS  60
STGNCLPTPT DVQTTHTNTS ASPKSSKTLQ KLQQNPTSLQ NFVVPGKARS KRKRATTPKT  120
IKPSSIWSHH PNPQHQTLIN MASSDPPLLQ QAYWLADSEL ILPKKEESNI LIRRGEQEET  180
REEEGEEEEE KGMMNKDKLG TLEGSNEQHQ MPRRCTHCLA QRTPQWRAGP LGPKTLCNAC  240
GVRYKSGRLL PEYRPAKSPT FVSYLHSNSH KKVMEMRMAL PSSIPSASGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0892507e-69BT089250.1 Soybean clone JCVI-FLGm-1B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929202.10.0GATA transcription factor 5-like
TrEMBLA0A2N9E4E41e-154A0A2N9E4E4_FAGSY; Uncharacterized protein
STRINGVIT_08s0007g07550.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-40GATA transcription factor 5