PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06242-snap-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 199aa    MW: 23104.3 Da    PI: 7.8572
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06242-snap-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.15.9e-33201192101
                                               HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
                              HSF_DNA-bind   2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 
                                               Fl+k+y++l          d++ ++++sw+++g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+Yg
  maker-scaffold06242-snap-gene-0.8-mRNA-1  20 FLSKTYDLLGgvaddedddDDDKRNIVSWNAEGTGFVVWSPAEFSEFMLPKYFKHNNFSSFIRQLNTYG 88 
                                               99*******9999998888889*********************************************** PP

                                               EEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
                              HSF_DNA-bind  62 FkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                                               Fkk+++++         weFkh++F+kg ++ll +i rkk
  maker-scaffold06242-snap-gene-0.8-mRNA-1  89 FKKTSSKR---------WEFKHEKFQKGCRNLLVEITRKK 119
                                               ****9998.........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3412113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.6E-4016118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-2617118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2920118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-96779IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-98092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MELNLLGTSQ SPRARCPAPF LSKTYDLLGG VADDEDDDDD DKRNIVSWNA EGTGFVVWSP  60
AEFSEFMLPK YFKHNNFSSF IRQLNTYGFK KTSSKRWEFK HEKFQKGCRN LLVEITRKKC  120
GPSIFPAYLK ASEENTMSMT AMEENNNHQL LLEEENKNLK REKLELQTQI AQFKALEIKL  180
LDYLAQCMGN NQNKVRRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-15611816129Heat shock factor protein 1
5d5v_B2e-15611816129Heat shock factor protein 1
5d5v_D2e-15611816129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023877712.11e-128heat stress transcription factor B-2a-like
TrEMBLA0A2N9I5661e-104A0A2N9I566_FAGSY; Uncharacterized protein
STRINGGLYMA01G34490.12e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-36heat shock factor 4