PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06283-snap-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 572aa    MW: 61563.7 Da    PI: 4.964
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06283-snap-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.21.2e-852244621251
                                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset 69 
                                               lv++L++cAeav++++lela al++++s la++++ +m+++a+yf+eALa r++r    ly    p++ 
  maker-scaffold06283-snap-gene-0.8-mRNA-1 224 LVHTLMACAEAVQNENLELAGALVKHISLLAASQAGAMKKVASYFAEALAFRIYR----LY----PQDC 284
                                               689****************************************************....33....4444 PP

                                      GRAS  70 seknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg 138
                                                + ++ ++l++   f+e++P+lkf+h+taNqaIlea+ +++ vH+iDf+++qG+QWpaL+qaLa Rp+g
  maker-scaffold06283-snap-gene-0.8-mRNA-1 285 LDPSVLDVLQM--HFYETCPYLKFAHFTANQAILEAFTTASSVHVIDFGLKQGMQWPALIQALALRPGG 351
                                               43335555544..4******************************************************* PP

                                      GRAS 139 ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVn 205
                                               pp +R+Tg+g+p+s+++++l+++g +L+++Ae++gv+f+f+ lva++l+d+el++L+++p   Ea+aVn
  maker-scaffold06283-snap-gene-0.8-mRNA-1 352 PPVFRLTGIGPPQSDNTDALQQVGLKLTQLAETIGVQFHFRGLVANSLADIELSMLDIRPaeVEAVAVN 420
                                               ************************************************************9899***** PP

                                      GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                               +v++lh++l++++s+e+    vL+++k ++Pk+v++veqea+hn++
  maker-scaffold06283-snap-gene-0.8-mRNA-1 421 SVFELHNMLARPGSIEK----VLSTIKAIKPKIVTLVEQEANHNGT 462
                                               *****************....**********************975 PP
2GRAS116.92.6e-36471566280374
                                      GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                                               +++  +++++lg++i nvvaceg +r+erhetl +Wr+rl+++GF+pv+l+++a kqa++ll+ ++ +d
  maker-scaffold06283-snap-gene-0.8-mRNA-1 471 SQDLLMSEMYLGKQIYNVVACEGVDRVERHETLTQWRSRLGASGFEPVHLGSNAFKQASMLLALFAgGD 539
                                               5778999************************************************************** PP

                                      GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                                               gyrvee++g+l+lgW++rpL+++SaW+
  maker-scaffold06283-snap-gene-0.8-mRNA-1 540 GYRVEENNGCLMLGWHTRPLIATSAWQ 566
                                               **************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.6E-2846109IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011296.4E-2946115No hitNo description
PROSITE profilePS5098554.368198545IPR005202Transcription factor GRAS
PfamPF035144.2E-83224462IPR005202Transcription factor GRAS
PfamPF035149.0E-34471566IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MNKRNHGETS SGGGFGVKGS GECSSSSSSG KAKMWDEEQD ASGGMDELLA VLGYKVKASE  60
MANVAEKLEQ LEMVMGTTPN LSCDSTVHYN PSDVSGWVQS MLSELNNPNP NLDPLQPIVE  120
SPVLVPPPTT TTTTATTVDS SAINNVAGFS NSQVDDSEYD LRAIPGSAVY PQTDIHEGSR  180
KRFKSSTGSC SSLLPSSSSL SSSNVCEQTR PVVLVDSQET GVRLVHTLMA CAEAVQNENL  240
ELAGALVKHI SLLAASQAGA MKKVASYFAE ALAFRIYRLY PQDCLDPSVL DVLQMHFYET  300
CPYLKFAHFT ANQAILEAFT TASSVHVIDF GLKQGMQWPA LIQALALRPG GPPVFRLTGI  360
GPPQSDNTDA LQQVGLKLTQ LAETIGVQFH FRGLVANSLA DIELSMLDIR PAEVEAVAVN  420
SVFELHNMLA RPGSIEKVLS TIKAIKPKIV TLVEQEANHN GTRSSGLVPE SQDLLMSEMY  480
LGKQIYNVVA CEGVDRVERH ETLTQWRSRL GASGFEPVHL GSNAFKQASM LLALFAGGDG  540
YRVEENNGCL MLGWHTRPLI ATSAWQLAAT DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5621956514378Protein SCARECROW
5b3h_A3e-5621956513377Protein SCARECROW
5b3h_D3e-5621956513377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885811.10.0DELLA protein GAI-like
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A2N9INX00.0A0A2N9INX0_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_116.430.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]