PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06320-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 413aa    MW: 44691.2 Da    PI: 6.3217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06320-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12347392655
                                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                   +++Er RR ri +++ +L++l+P+     +k  + a++L +AveYIk Lq
  maker-scaffold06320-augustus-gene-0.9-mRNA-1 347 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKGLQ 392
                                                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.919341391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-16344404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-12345396No hitNo description
Gene3DG3DSA:4.10.280.102.8E-15346404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9347392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-14347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MESDLQQHHH QNQMNSGLTR YRSAPSSYFA NIIDREFCEE FFNRPPSPET ERIFARFIAG  60
NGGVGGNGGT EATNTSEVVA TEASNQQTQF MASMNNEAAG VLQQQQSNYG SASQNFYQGP  120
PRPPLPNSSV EGSYSMGLDR LPQMKNGGGG GGGGGNNSSL IRHSSSPAGL FANINVGEGY  180
GTMRGVGNFG AGNSTSEEAS FSSASRLKNY SSGPPSSSGL MSPIDEIEDK NVVVVNNPES  240
GGFGEGRSSN YVTGFPLGSW DDSAMISDNI TGLKRLRDDD DVKSFSNINV SETQNVEAGN  300
RPPPLAHHLS LPKTSSEMAA IEKFLQFQDS VPCKIRAKRG CATHPRSIAE RVRRTRISER  360
MRKLQDLVPN MDKQTNTADM LDLAVEYIKG LQQEVETLTD KRAKCTCSHK QQQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916484.10.0transcription factor bHLH130-like isoform X1
RefseqXP_023916485.10.0transcription factor bHLH130-like isoform X1
TrEMBLA0A2N9J1C80.0A0A2N9J1C8_FAGSY; Uncharacterized protein
STRINGXP_008352410.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-78bHLH family protein