PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06436-augustus-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 518aa    MW: 56581.5 Da    PI: 4.829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06436-augustus-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-153178148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT+ Ed +l ++vk++G g+W+++ +  g+ R++k+c++rw ++l
  maker-scaffold06436-augustus-gene-0.12-mRNA-1 31 KGPWTAAEDSILMEYVKKFGEGNWNAVQKNCGLMRCGKSCRLRWANHL 78
                                                   79******************************************9986 PP
2Myb_DNA-binding45.71.5e-1484127146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    +g+++ eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
  maker-scaffold06436-augustus-gene-0.12-mRNA-1  84 KGSFSGEEERIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 127
                                                    68999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2562678IPR017930Myb domain
SuperFamilySSF466892.13E-2928125IPR009057Homeodomain-like
SMARTSM007178.0E-123080IPR001005SANT/Myb domain
PfamPF002494.4E-143178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-233285IPR009057Homeodomain-like
CDDcd001674.37E-103378No hitNo description
PROSITE profilePS5129424.71479133IPR017930Myb domain
SMARTSM007173.2E-1583131IPR001005SANT/Myb domain
PfamPF002491.6E-1384127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2486132IPR009057Homeodomain-like
CDDcd001677.58E-1186127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MISKSVEGAQ NQEAMAAAKG EAELSRAGLK KGPWTAAEDS ILMEYVKKFG EGNWNAVQKN  60
CGLMRCGKSC RLRWANHLRP NLKKGSFSGE EERIIIELHA KLGNKWARMA AQLPGRTDNE  120
IKNYWNTRMK RRQRAGLPLY PQEVQQEAAV FHLLQQQNHQ KQPHSSSVPF SAFLPSSQPR  180
KLNYNPSLSV FNTMNFSSPT NPIQNQVTPD FYSNPSNQFK FFSENNNNPA YALPLSPVSP  240
FGSSPSPIFN QNIAPQPLSA PFVEYNSDSF GSSQYNRSPA VMGPAPYEPF GLVQGLETEL  300
PSNQTPLNST THTSSTSSGD ENPLGASSSA NDFEIENPLS QSPDNSGLLD ALLVESQTLC  360
EKSKGKEVSA AVASDKGKGV MVEASTEEED PMNVDSVFKT SGETSAENHW DDLSSSQSQS  420
QSQSSIGMKP AEDPLEEMNS MDDDLASLLT NFPSAMPTPE WYRGGHHLSN GQSSGVESDN  480
VRLDTQQSAS PALVTNTTEP ELESGLSPCY WKNLPGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32291325107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886859.10.0transcription factor MYB101-like
TrEMBLA0A2N9I5470.0A0A2N9I547_FAGSY; Uncharacterized protein
STRINGEOY022061e-140(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-81myb domain protein 101