PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06443-snap-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 426aa    MW: 47559 Da    PI: 9.8752
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06443-snap-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07130171446
                                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                            Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                WT+eE ++l d+++q+  + +  Ia ++   Rt +++k+r+++
  maker-scaffold06443-snap-gene-0.14-mRNA-1 130 WTKEETDQLFDLCQQFDLR-FIVIADRFSSSRTVEELKDRYYS 171
                                                *******************.*********9***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162821.9E-32102176IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007172.5E-7126175IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-6126176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-6129174IPR009057Homeodomain-like
CDDcd116582.32E-19130173No hitNo description
PfamPF054996.5E-6319368IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDAKDILGLP KNSLPIPQEK KSRPPKDSQR KPDGISREVY ALTGGLAPLM PAIDSSQLKK  60
QPPKDEKITW QWLPFTNSAR KDTLQLYHWV RVVNGVPPTG DYSFAKYNKS VDIVKYTDEE  120
YEKYLNDPGW TKEETDQLFD LCQQFDLRFI VIADRFSSSR TVEELKDRYY SVCRAIVVAR  180
APALGDSSGT PLVKEPYNVS QEIERKRALS MVLSQTKHQE RKDAEVLAEA KRITESRMAA  240
KVAEESELPV SSNAGPESAE RASFPGDTVS PSSNVQLPSA TVASSALTAD NASTLASLRM  300
LRVYLRTYAL DQMVQAASSS AGLRTIKRVE QTLQELGVNL KPRVPTKSVC AEHLELRKEI  360
LTLLNLQKQR PNRGGDQDRT FVPDMSFGGE RVGKRDQKRK APGRLSEAPS SPAQSKRPRK  420
LKASEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A2e-23101181488DNA methyltransferase 1-associated protein 1
4iej_A2e-23101181488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1215460.0KC121546.2 Quercus suber DNA methyltransferase associated protein 1 (DMAP1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927278.10.0SWR1-complex protein 4 isoform X1
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A2N9IQ570.0A0A2N9IQ57_FAGSY; Uncharacterized protein
STRINGXP_010094407.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]