PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06446-augustus-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 482aa    MW: 54164.9 Da    PI: 8.127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06446-augustus-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17144190148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                   +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  maker-scaffold06446-augustus-gene-0.7-mRNA-1 144 KGQWTDEEDRKLIKLVKQYGVRKWAQIAEKLA-GRAGKQCRERWHNHL 190
                                                   799*****************************.*************97 PP
2Myb_DNA-binding57.14.1e-18197238245
                                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                                   + W++eE+ +lv+a+++ G++ W+ Ia++++ gRt++++k++w+
  maker-scaffold06446-augustus-gene-0.7-mRNA-1 197 DGWSEEEERILVEAHTKVGNR-WAEIAKCIP-GRTENSIKNHWN 238
                                                   56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.666139194IPR017930Myb domain
SuperFamilySSF466892.62E-30142237IPR009057Homeodomain-like
SMARTSM007171.3E-17143192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-28145198IPR009057Homeodomain-like
PfamPF139211.7E-20147204No hitNo description
CDDcd001672.25E-16147190No hitNo description
PROSITE profilePS5129418.97195245IPR017930Myb domain
SMARTSM007171.2E-16195243IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-20199243IPR009057Homeodomain-like
CDDcd001671.60E-13199241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAEGGEASGV NGGGVCGHAN SQNNPPICRF GPPLTAIDRF LYGQNHFSQQ QTHNNIARNK  60
DVLVLDNGLC NFPPPRGAIG GGVSWPSVQE VNFVDEFFVD REPLNWKYER NTNMGFNEES  120
KVVAKSSKGL GKKAKKANFA TLIKGQWTDE EDRKLIKLVK QYGVRKWAQI AEKLAGRAGK  180
QCRERWHNHL RPDIKKDGWS EEEERILVEA HTKVGNRWAE IAKCIPGRTE NSIKNHWNAT  240
KRRQNSRRKN KQSDRQKGKP HSSVLQDYIK SKNTSNTSMI TSTPTQSTTT TANTSSSTLS  300
EDPSNHLNYY IPELSESTTD DSSTLISQTY DDELLFMQNF FANQLNQPHV DNNNNKVMAH  360
IDLYKAPSTS KPYDFFQNNG DHLLTDNVTE CGFASLTSNS SLQLNDNFQA KESSTPTTRL  420
YSDLYLSYLL NGSANSLPPN DYSSYYNNIN MDFQADQAYS SNGKKEMDLI ELVSSAQFLT  480
GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-461422442104C-Myb DNA-Binding Domain
1msf_C4e-461422442104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873311.10.0transcription factor MYB119-like
TrEMBLA0A2N9I0S30.0A0A2N9I0S3_FAGSY; Uncharacterized protein
STRINGcassava4.1_033771m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-59myb domain protein 119