PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold06450-augustus-gene-0.17-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 254aa MW: 28858.4 Da PI: 9.5594

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold06450-augustus-gene-0.17-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166	1.3e-51	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp e+e y+Fs+r maker-scaffold06450-augustus-gene-0.17-mRNA-1 14 LPPGFRFHPTDEELVVQYLKRKVFSYPLPA-SIIPEVDVCKFDPWDLPGD---LEQERYYFSTR 73 79**************************.89***********54...46799** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + ky++g+r+nrat sgyWkatg dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyr maker-scaffold06450-augustus-gene-0.17-mRNA-1 74 EAKYPNGNRSNRATGSGYWKATGIDKQIVTSrGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYR 137 ***********************999857778*************************9 PP NAM 128 l 128 + maker-scaffold06450-augustus-gene-0.17-mRNA-1 138 F 138 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-60	10	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.37	14	173	IPR003441	NAC domain
Pfam	PF02365	3.4E-26	15	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSYP LPASIIPEVD VCKFDPWDLP 60 GDLEQERYYF STREAKYPNG NRSNRATGSG YWKATGIDKQ IVTSRGNQVV GMKKTLVFYR 120 GKPPHGSRTD WIMHEYRFVT AETSPSNAPQ KKTSTESSVV PMENWVLCRI FLKKRSNKSE 180 DDNVQTGNEN TVGKLRTTKP VFYDFMTKGR TDLNVAPASS SSGSSGITEV SSNESDDHEE 240 SSSCNSFPYF RRKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-54	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-54	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-54	12	178	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-54	12	178	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	9e-54	12	178	18	173	NAC domain-containing protein 19
3swm_B	9e-54	12	178	18	173	NAC domain-containing protein 19
3swm_C	9e-54	12	178	18	173	NAC domain-containing protein 19
3swm_D	9e-54	12	178	18	173	NAC domain-containing protein 19
3swp_A	9e-54	12	178	18	173	NAC domain-containing protein 19
3swp_B	9e-54	12	178	18	173	NAC domain-containing protein 19
3swp_C	9e-54	12	178	18	173	NAC domain-containing protein 19
3swp_D	9e-54	12	178	18	173	NAC domain-containing protein 19
4dul_A	8e-54	12	178	15	170	NAC domain-containing protein 19
4dul_B	8e-54	12	178	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023882156.1	1e-177	NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-105	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2N9I3D4	1e-166	A0A2N9I3D4_FAGSY; Uncharacterized protein
STRING	cassava4.1_014491m	1e-161	(Manihot esculenta)
STRING	cassava4.1_014492m	1e-160	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-102	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]