PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06605-augustus-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRF
Protein Properties Length: 653aa    MW: 71109.5 Da    PI: 8.268
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06605-augustus-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.8e-24259303145
                                            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                                    d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  maker-scaffold06605-augustus-gene-0.14-mRNA-1 259 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 303
                                                    79****************************************985 PP
2QLQ52.12.1e-18189225137
                                            QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                                    ++FT++Q+ +L++Q+l+yKy+ +n+ vP++Ll+++++
  maker-scaffold06605-augustus-gene-0.14-mRNA-1 189 GPFTPSQWIELEHQALIYKYITSNVAVPSNLLFPLKR 225
                                                    59********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.0E-10189225IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-12190223IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.784190225IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287259303IPR014977WRC domain
PfamPF088798.6E-21260302IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MDFGVMGLED LVGPEGRGGS FKVSDPETKL KGLGSGLVKQ HKSGAGEDDW KSSKMAKSDS  60
LSAYKTMSLH PGTPLLRSNT LPISDNRQQE LMLSFSSVKS EVPFLSKDGG LVDKATNNSV  120
FPYYQRTPSA YSRNAGNPLT RSLAWFELSM LRVLGEDLYL VFYLHCLFSA YGSGSLNPSM  180
HGSFAGVRGP FTPSQWIELE HQALIYKYIT SNVAVPSNLL FPLKRSLYPY GLSGSATGSS  240
PYNSLGWGSF HLGFSGNTDP EPGRCRRTDG KKWRCSRDAV ADQKYCERHI NRGRHRSRKP  300
VEGQTGHAAP GATNSKVLPG TSSLSTVVIP SSGASNNLAM TQHQFKNLQP SGASNPSADA  360
LVSRGLYGRH YRDISFLFWN RENVCARMQD PRGLSTMSST ISLKSNEPTF TILKQGIPLE  420
ESSQSEFGLV STDSLLHPSH RVSYLNSKSY GSFLDFNDQE CQDQHPLRQF IDELPKDQSN  480
LSVMSWPEEL KSDWTQLSMS IPMAPSDFSS SSSSPTQDKL SPLRLSREFE PIQMNLGMST  540
DFSEPTQKQT NWIPISWGTS MGGPLGEVLT STTSTARACN NSSALNLLTE GWDGSPQLGS  600
SPTGVLQKAP FGSLSNSSSG SSPRVENKRS REGASLFEDV LGSTLASSSI PSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917028.10.0growth-regulating factor 1
TrEMBLA0A2N9FPU80.0A0A2N9FPU8_FAGSY; Uncharacterized protein
STRINGEOX917540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-113growth-regulating factor 1