PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06605-augustus-gene-0.14-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRF
Protein Properties Length: 602aa    MW: 64940.3 Da    PI: 8.1369
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06605-augustus-gene-0.14-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24225269145
                                            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                                    d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  maker-scaffold06605-augustus-gene-0.14-mRNA-2 225 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 269
                                                    79****************************************985 PP
2QLQ52.21.9e-18155191137
                                            QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                                    ++FT++Q+ +L++Q+l+yKy+ +n+ vP++Ll+++++
  maker-scaffold06605-augustus-gene-0.14-mRNA-2 155 GPFTPSQWIELEHQALIYKYITSNVAVPSNLLFPLKR 191
                                                    59********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.0E-10155191IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-12156189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.784156191IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287225269IPR014977WRC domain
PfamPF088797.7E-21226268IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDFGVMGLED LVGPEGRGGS FKVSDPETKL KGLGSGLVKQ HKSGAGEDDW KSSKMAKSDS  60
LSAYKTMSLH PGTPLLRSNT LPISDNRQQE LMLSFSSVKS EVPFLSKDGG LVDKATNNSV  120
FPYYQRTPSA YSRNAAYGSG SLNPSMHGSF AGVRGPFTPS QWIELEHQAL IYKYITSNVA  180
VPSNLLFPLK RSLYPYGLSG SATGSSPYNS LGWGSFHLGF SGNTDPEPGR CRRTDGKKWR  240
CSRDAVADQK YCERHINRGR HRSRKPVEGQ TGHAAPGATN SKVLPGTSSL STVVIPSSGA  300
SNNLAMTQHQ FKNLQPSGAS NPSADALVSR ENVCARMQDP RGLSTMSSTI SLKSNEPTFT  360
ILKQGIPLEE SSQSEFGLVS TDSLLHPSHR VSYLNSKSYG SFLDFNDQEC QDQHPLRQFI  420
DELPKDQSNL SVMSWPEELK SDWTQLSMSI PMAPSDFSSS SSSPTQDKLS PLRLSREFEP  480
IQMNLGMSTD FSEPTQKQTN WIPISWGTSM GGPLGEVLTS TTSTARACNN SSALNLLTEG  540
WDGSPQLGSS PTGVLQKAPF GSLSNSSSGS SPRVENKRSR EGASLFEDVL GSTLASSSIP  600
SL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917028.10.0growth-regulating factor 1
SwissprotO810011e-134GRF1_ARATH; Growth-regulating factor 1
TrEMBLA0A2N9FPU80.0A0A2N9FPU8_FAGSY; Uncharacterized protein
STRINGEMJ092290.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-123growth-regulating factor 1
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]