PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06619-snap-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 329aa    MW: 34858.5 Da    PI: 4.9466
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06619-snap-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16229265135
                                       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                                C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  maker-scaffold06619-snap-gene-0.10-mRNA-1 229 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 265
                                                *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94289124IPR010399Tify domain
SMARTSM009794.2E-789124IPR010399Tify domain
PfamPF062003.2E-1092123IPR010399Tify domain
PROSITE profilePS5101712.709157199IPR010402CCT domain
PfamPF062039.0E-15157199IPR010402CCT domain
SMARTSM004015.6E-9223276IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.51223271IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-11224273No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14227270IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.77E-15228278No hitNo description
PfamPF003206.2E-14229265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAAANPQPLQ ARPYGDHVAV RGPIPLEDDD EGEYEDGGGG GGGGGGDDAM DDLEDAHVNS  60
VSVAEYGVGV GVGVGGGGGG GGVGGGVVMA SRTSELTLSF EGEVYVFPAV TPEKVQAVLL  120
LLGGRDVPTG VPTIEVPFNQ NNRGVGETPK RSNLSRRIAS LVRFREKRKE RCFDKKIRYT  180
VRKEVAQRMH RKNGQFASVK ENSGASSWDS PQSCPQDGTP RPESVLRRCQ HCGVSENNTP  240
AMRRGPAGPR TLCNACGLMW ANKGTLRDLS KGGRNVSMDH VEPETPVDVK PSITDGEFCG  300
NQDEQEAPED SSKPVTEGTN KSTVNPDEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151ETPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891083.10.0GATA transcription factor 24-like isoform X3
SwissprotQ8GXL73e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2I4HT191e-172A0A2I4HT19_JUGRE; GATA transcription factor 24-like
STRINGXP_008219237.11e-167(Prunus mume)
STRINGEMJ286691e-167(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]