PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold06670-snap-gene-0.21-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 162aa MW: 18763.1 Da PI: 5.6466

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold06670-snap-gene-0.21-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.7	2.6e-19	34	113	13	98
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 ++lv+pk+f ++ + k+ ++ tl+ +sg +W+v+l + +++++++ +GW++Fvk++ L+e D + maker-scaffold06670-snap-gene-0.21-mRNA-1 34 DRQLVIPKTFSDNLK--KKLPQSATLKGPSGLTWDVEL--TTNDDATFFNNGWQKFVKDHSLEETDLL 97 467*****85555..458889***********..************************ PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 vF+ + ++ v +f+ maker-scaffold06670-snap-gene-0.21-mRNA-1 98 VFRSN--CWSQFDVLIFD 113 *44..44444888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.51E-21	19	114	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.297	22	115	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.8E-20	23	113	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	9.1E-10	25	115	IPR003340	B3 DNA binding domain
CDD	cd10017	1.11E-15	32	113	No hit	No description
Pfam	PF02362	1.8E-16	35	113	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGDACKDWSK WAEDTYWTQI QTFHFYQFLL SGFDRQLVIP KTFSDNLKKK LPQSATLKGP 60 SGLTWDVELT TNDDATFFNN GWQKFVKDHS LEETDLLVFR SNCWSQFDVL IFDGKNLCEK 120 GASYFVRKCG QTEHDNRCLT KKRLREGSMD DVHNPLDVDA GC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023914235.1	1e-108	B3 domain-containing protein REM16-like
Swissprot	Q8RYD1	2e-48	REM16_ARATH; B3 domain-containing protein REM16
TrEMBL	A0A2N9ITR9	3e-83	A0A2N9ITR9_FAGSY; Uncharacterized protein
STRING	EOY14621	5e-58	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4446	26	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	9e-51	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]