PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06881-snap-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 504aa    MW: 54948.8 Da    PI: 9.7322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06881-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001483103323
                                                ETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                                C++C+k F r  nL+ H r H
  maker-scaffold06881-snap-gene-0.13-mRNA-1  83 CEICNKGFQRDQNLQLHRRGH 103
                                                *******************88 PP
2zf-C2H212.50.00045157179123
                                                EEETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                +kC++C+k++  +s+ k H + +
  maker-scaffold06881-snap-gene-0.13-mRNA-1 157 WKCEKCSKRYAVQSDWKAHSKIC 179
                                                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-680103No hitNo description
SMARTSM003550.1181103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82481103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355240122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-6152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MMNNMLMAEN MSNLTTSASG EISASSSTRN ETTGTLYSQQ SSASTNLAPP PKKKRNLPGN  60
PDPEAEVIAL SPKSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSKEVRKK  120
VYICPEATCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TKEYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARAITATT TNPLLSSQTP LHSHGIKAAL  240
QLKREQEVLN LPSDIPPWLT CPTPSAAGPA GPPSLNLSSS HLFSTNLDQP LVLHHENPTS  300
NPKPNSTTLP PFHPIAASPH MSATALLQKA AQMGATMSHP SPSQSMLRPG HHHQPHMSDT  360
HSGFSPTSIT SSKAVSGLGL PSREEIGSGF AHSLASFENK AAANTVPTGF MQQQQSPSLL  420
HDMMSSSLPS SSGFEGPSFQ EAFNGTGNNN HRGGNEGMTR DFLGLRAFSH KDFINMAAGF  480
EQMNGNSSSR SYGQHNRNQA PWQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34153222372Zinc finger protein JACKDAW
5b3h_F2e-34153222372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107119KLKQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904711.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-117IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2N9HH830.0A0A2N9HH83_FAGSY; Uncharacterized protein
STRINGVIT_04s0008g01160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-115indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]