PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07005-augustus-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 267aa    MW: 30423.8 Da    PI: 8.5803
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07005-augustus-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.3e-1220105899
                                                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                                             B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                                                     ++ ++  l++p kf++++g +   s+  tl  + g +W+v l   k  + +++ +G ++F + 
  maker-scaffold07005-augustus-gene-0.14-mRNA-1  20 LSTIENMKLSIPPKFVKDFGDE--ISTLATLSVSCGGTWKVGL--LKAEKNIWFCDGLEDFFEY 79 
                                                    56777888********999865..8889***************..999999************* PP

                                                    HT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                             B3  72 ngLkegDfvvFkldgrsefelvvkvfrk 99 
                                                    + + +g  +vF+++g+s+f  +v +f+k
  maker-scaffold07005-augustus-gene-0.14-mRNA-1  80 HSISAGHLLVFRYEGHSNF--HVIIFDK 105
                                                    **************99999..**99998 PP
2B351.22.2e-16167260398
                                                    EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTH CS
                                             B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGW 65 
                                                    +vl ++++ + + +++pk fa++h      ++ + l+++  ++W+v++ +++ +s+++ l+ GW
  maker-scaffold07005-augustus-gene-0.14-mRNA-1 167 TVL-QPYNIRFKYVYVPKGFANKHVAW---NQFVNLQTSGKKQWRVRCySHTSTSSAMRLGMGW 226
                                                    444.7788888889*******999433...2369**************333777777******* PP

                                                    HHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                                             B3  66 keFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                                                      F ++n L+egD++vF+++++  +  ++v++fr
  maker-scaffold07005-augustus-gene-0.14-mRNA-1 227 AAFSRDNYLEEGDVCVFEVIKTsPTILMRVSIFR 260
                                                    ******************9998677777777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-198106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-208106IPR015300DNA-binding pseudobarrel domain
CDDcd100178.76E-1413104No hitNo description
PROSITE profilePS5086310.16513106IPR003340B3 DNA binding domain
SMARTSM010197.4E-1014106IPR003340B3 DNA binding domain
PfamPF023621.0E-917105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-20159260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-17160260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.533164262IPR003340B3 DNA binding domain
SMARTSM010191.8E-5165262IPR003340B3 DNA binding domain
CDDcd100172.75E-14165260No hitNo description
PfamPF023626.9E-14165260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVPKAKNNSP PSHFFKIILL STIENMKLSI PPKFVKDFGD EISTLATLSV SCGGTWKVGL  60
LKAEKNIWFC DGLEDFFEYH SISAGHLLVF RYEGHSNFHV IIFDKTATET QYPSSKNAIL  120
EEPEDVVELD ESEMSRQDMQ PPNTSSKGRE RAFQAAKMSM PKSAFLTVLQ PYNIRFKYVY  180
VPKGFANKHV AWNQFVNLQT SGKKQWRVRC YSHTSTSSAM RLGMGWAAFS RDNYLEEGDV  240
CVFEVIKTSP TILMRVSIFR VQDYAVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1614326426145B3 domain-containing transcription factor VRN1
4i1k_B1e-1614326426145B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901724.11e-166B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9HQA11e-91A0A2N9HQA1_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-26B3 family protein