PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07037-snap-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 178aa    MW: 20131.9 Da    PI: 7.765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07037-snap-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12960255
                                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                                       HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                                              r+  + +Er+RR++++  +++L++l+P++   +s+   s  + L +A +YIk Lq
  maker-scaffold07037-snap-gene-0.9-mRNA-1  9 RTDRKTIERNRRNQMKALYSQLQSLVPHQ---TSREvTSLPDQLDEAANYIKRLQ 60
                                              778899**********************9...88888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-13574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-7564No hitNo description
PROSITE profilePS5088811.795759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-12973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-41365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENNPSSSRT DRKTIERNRR NQMKALYSQL QSLVPHQTSR EVTSLPDQLD EAANYIKRLQ  60
TKLERMKEKK NNLMGIHEKS NASTNCGMMM GFKPPQIEIH EVGSALEVVL KTGLDFQFMF  120
NETIRVLHEE GAEIVNASFT VVEDTVFHTI HSKVGDSALG YGAAGIYERL KKFVSDAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912623.11e-127transcription factor bHLH162 isoform X2
SwissprotF4JIJ72e-47BH162_ARATH; Transcription factor bHLH162
TrEMBLA5C0F46e-96A5C0F4_VITVI; Uncharacterized protein
STRINGPOPTR_0011s05320.16e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-50bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]