PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07067-augustus-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 705aa    MW: 80076.1 Da    PI: 5.1505
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07067-augustus-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1157.7e-3691721128
                                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................ 49 
                                                   lppG+rF+P+d+e++  yLkkk++g++ ++  +i+e++ yk ePwdLp+                
  maker-scaffold07067-augustus-gene-0.6-mRNA-1   9 LPPGVRFSPKDKEVIELYLKKKITGNDKDT-WFIPEIEFYKDEPWDLPSnllvfllshthlhfle 72 
                                                   79*************************888.78***************5599************* PP

                                           NAM  50 ........kvkaeekewyfFskrdkkya...........tgkrknratksgyWkatgkdkevlsk 95 
                                                            +++e++ew+fF++++ k++           +++r +r+tk gyWk+tg+d+e++s 
  maker-scaffold07067-augustus-gene-0.6-mRNA-1  73 nlmpffksGIATEDQEWFFFTEQSLKHQddnpkkrkrdqKQERVSRKTKVGYWKSTGTDREIKS- 136
                                                   999999886777999*******9999994444433333233355555*****************. PP

                                           NAM  96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                                                   +++l+g+kktLvf+   ++ ++kg  t+Wvmhey+ 
  maker-scaffold07067-augustus-gene-0.6-mRNA-1 137 GESLIGMKKTLVFHignTKGREKGIGTKWVMHEYST 172
                                                   999***********665445678899********85 PP
2NAM121.38.9e-385456861128
                                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 
                                                   lppG+rF+P+d e++  yLkkk++g++ ++  +i+e++ yk ePwdLp k  ++++++ew+fF++
  maker-scaffold07067-augustus-gene-0.6-mRNA-1 545 LPPGVRFSPKDPEVIELYLKKKITGHDEDT-WFIPEIEFYKDEPWDLPiKsGIATKDQEWFFFTE 608
                                                   79*************************888.78**************96346777999******* PP

                                           NAM  64 rdkkyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfy...kgrap 114
                                                   ++ k+++++ k+r+           tk+g+Wk+tg d+e+   +++l+g+kktLvf+   +++++
  maker-scaffold07067-augustus-gene-0.6-mRNA-1 609 QSLKHQNDNPKKRKrgqkqelvnrqTKAGFWKSTGPDREIEF-GESLIGMKKTLVFHirsNKKEE 672
                                                   *****98887777667888888888****************9.999***********88767899 PP

                                           NAM 115 kgektdWvmheyrl 128
                                                   k+++t+Wvmheyr 
  maker-scaffold07067-augustus-gene-0.6-mRNA-1 673 KARRTNWVMHEYRT 686
                                                   999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-356202IPR003441NAC domain
PROSITE profilePS5100539.9429204IPR003441NAC domain
PfamPF023652.7E-2210171IPR003441NAC domain
SuperFamilySSF1019411.26E-38540691IPR003441NAC domain
PROSITE profilePS5100539.942545705IPR003441NAC domain
PfamPF023654.7E-22546685IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MEKLSLDHLP PGVRFSPKDK EVIELYLKKK ITGNDKDTWF IPEIEFYKDE PWDLPSNLLV  60
FLLSHTHLHF LENLMPFFKS GIATEDQEWF FFTEQSLKHQ DDNPKKRKRD QKQERVSRKT  120
KVGYWKSTGT DREIKSGESL IGMKKTLVFH IGNTKGREKG IGTKWVMHEY STTQKDFDGK  180
HPGQIVLPPK SSEKAFVLCR LFDNQEKSTN GGPAASLDTT SCIEETKSKL SVAPVSPALD  240
VQAETPQTSN QSCYAKIPDE MLSDATAPVQ CENASVAEKL EAEMTSSEDE FNVEEFLNNL  300
SPSAFDFYVD KMMSDAPAPI QFENDNFNSE VDQDLEKAPK MFYPHPPEPL DCNFSSVSTI  360
TTATPAVSSP TTAKASLEEA QSMLAPASVS PKLGSEADNY PMSFQCCPAE NSDGIASSSI  420
PPIKYNGYNT CAAKNDVVEK TSDEMQADDC FRYKSSSQNN LAFDDETQEN MVSAQFDQEY  480
QDLLWLEDII KSPKDSPGLY ESGSEGGIVT FRILIKILAT PRLCYRVKQV QSSLLLMEKL  540
SLDHLPPGVR FSPKDPEVIE LYLKKKITGH DEDTWFIPEI EFYKDEPWDL PIKSGIATKD  600
QEWFFFTEQS LKHQNDNPKK RKRGQKQELV NRQTKAGFWK STGPDREIEF GESLIGMKKT  660
LVFHIRSNKK EEKARRTNWV MHEYRTTQKE FDGKHPGQVG FCNSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-24968817169NO APICAL MERISTEM PROTEIN
1ut4_B3e-24968817169NO APICAL MERISTEM PROTEIN
1ut7_A3e-24968817169NO APICAL MERISTEM PROTEIN
1ut7_B3e-24968817169NO APICAL MERISTEM PROTEIN
3swm_A3e-24968820172NAC domain-containing protein 19
3swm_B3e-24968820172NAC domain-containing protein 19
3swm_C3e-24968820172NAC domain-containing protein 19
3swm_D3e-24968820172NAC domain-containing protein 19
3swp_A3e-24968820172NAC domain-containing protein 19
3swp_B3e-24968820172NAC domain-containing protein 19
3swp_C3e-24968820172NAC domain-containing protein 19
3swp_D3e-24968820172NAC domain-containing protein 19
4dul_A3e-24968817169NAC domain-containing protein 19
4dul_B3e-24968817169NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913059.10.0protein NTM1-like 9 isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-39NAC domain containing protein 62