PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07067-augustus-gene-0.6-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 640aa    MW: 72495 Da    PI: 4.8024
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07067-augustus-gene-0.6-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.86.2e-3891501128
                                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 
                                                   lppG+rF+P+d+e++  yLkkk++g++ ++  +i+e++ yk ePwdLp k  +++e++ew+fF++
  maker-scaffold07067-augustus-gene-0.6-mRNA-2   9 LPPGVRFSPKDKEVIELYLKKKITGNDKDT-WFIPEIEFYKDEPWDLPiKsGIATEDQEWFFFTE 72 
                                                   79*************************888.78**************96347777999******* PP

                                           NAM  64 rdkkya...........tgkrknratksgyWkatgkdkevlskkgelvglkktLvfy...kgrap 114
                                                   ++ k++           +++r +r+tk gyWk+tg+d+e++s +++l+g+kktLvf+   ++ ++
  maker-scaffold07067-augustus-gene-0.6-mRNA-2  73 QSLKHQddnpkkrkrdqKQERVSRKTKVGYWKSTGTDREIKS-GESLIGMKKTLVFHignTKGRE 136
                                                   9999994444433333233355555*****************.999***********66544567 PP

                                           NAM 115 kgektdWvmheyrl 128
                                                   kg  t+Wvmhey+ 
  maker-scaffold07067-augustus-gene-0.6-mRNA-2 137 KGIGTKWVMHEYST 150
                                                   8899********85 PP
2NAM1095.6e-344866217128
                                           NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya 69 
                                                   F+P+d e++  yLkkk++g++ ++  +i+e++ yk ePwdLp k  ++++++ew+fF++++ k++
  maker-scaffold07067-augustus-gene-0.6-mRNA-2 486 FSPKDPEVIELYLKKKITGHDEDT-WFIPEIEFYKDEPWDLPiKsGIATKDQEWFFFTEQSLKHQ 549
                                                   9********************888.78**************96346777999************9 PP

                                           NAM  70 tgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektd 120
                                                   +++ k+r+           tk+g+Wk+tg d+e+   +++l+g+kktLvf+   +++++k+++t+
  maker-scaffold07067-augustus-gene-0.6-mRNA-2 550 NDNPKKRKrgqkqelvnrqTKAGFWKSTGPDREIEF-GESLIGMKKTLVFHirsNKKEEKARRTN 613
                                                   8887777667888888888****************9.999***********88767899999*** PP

                                           NAM 121 Wvmheyrl 128
                                                   Wvmheyr 
  maker-scaffold07067-augustus-gene-0.6-mRNA-2 614 WVMHEYRT 621
                                                   ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-406180IPR003441NAC domain
PROSITE profilePS5100542.9489182IPR003441NAC domain
PfamPF023657.6E-2310149IPR003441NAC domain
PROSITE profilePS5100534.666480640IPR003441NAC domain
SuperFamilySSF1019414.58E-34485626IPR003441NAC domain
PfamPF023653.2E-19486620IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEKLSLDHLP PGVRFSPKDK EVIELYLKKK ITGNDKDTWF IPEIEFYKDE PWDLPIKSGI  60
ATEDQEWFFF TEQSLKHQDD NPKKRKRDQK QERVSRKTKV GYWKSTGTDR EIKSGESLIG  120
MKKTLVFHIG NTKGREKGIG TKWVMHEYST TQKDFDGKHP GQIVLPPKSS EKAFVLCRLF  180
DNQEKSTNGG PAASLDTTSC IEETKSKLSV APVSPALDVQ AETPQTSNQS CYAKIPDEML  240
SDATAPVQCE NASVAEKLEA EMTSSEDEFN VEEFLNNLSP SAFDFYVDKM MSDAPAPIQF  300
ENDNFNSEVD QDLEKAPKMF YPHPPEPLDC NFSSVSTITT ATPAVSSPTT AKASLEEAQS  360
MLAPASVSPK LGSEADNYPM SFQCCPAENS DGIASSSIPP IKYNGYNTCA AKNDVVEKTS  420
DEMQADDCFR YKSSSQNNLA FDDETQENMV SAQFDQEYQD LLWLEDIIKS PKDSPGLYES  480
GSEGGFSPKD PEVIELYLKK KITGHDEDTW FIPEIEFYKD EPWDLPIKSG IATKDQEWFF  540
FTEQSLKHQN DNPKKRKRGQ KQELVNRQTK AGFWKSTGPD REIEFGESLI GMKKTLVFHI  600
RSNKKEEKAR RTNWVMHEYR TTQKEFDGKH PGQVGFCNSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-25962317169NO APICAL MERISTEM PROTEIN
1ut4_B8e-25962317169NO APICAL MERISTEM PROTEIN
1ut7_A8e-25962317169NO APICAL MERISTEM PROTEIN
1ut7_B8e-25962317169NO APICAL MERISTEM PROTEIN
3swm_A7e-25962320172NAC domain-containing protein 19
3swm_B7e-25962320172NAC domain-containing protein 19
3swm_C7e-25962320172NAC domain-containing protein 19
3swm_D7e-25962320172NAC domain-containing protein 19
3swp_A7e-25962320172NAC domain-containing protein 19
3swp_B7e-25962320172NAC domain-containing protein 19
3swp_C7e-25962320172NAC domain-containing protein 19
3swp_D7e-25962320172NAC domain-containing protein 19
4dul_A8e-25962317169NAC domain-containing protein 19
4dul_B8e-25962317169NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913059.10.0protein NTM1-like 9 isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-44NAC transcription factor-like 9