PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold07067-augustus-gene-0.6-mRNA-3

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 175aa MW: 20668.6 Da PI: 9.6287

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold07067-augustus-gene-0.6-mRNA-3	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	125.9	3.3e-39	15	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 lppG+rF+P+d e++ yLkkk++g++ ++ +i+e++ yk ePwdLp k ++++++ew+fF++ maker-scaffold07067-augustus-gene-0.6-mRNA-3 15 LPPGVRFSPKDPEVIELYLKKKITGHDEDT-WFIPEIEFYKDEPWDLPiKsGIATKDQEWFFFTE 78 79***********************888.78**********96346777999*** PP NAM 64 rdkkyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfy...kgrap 114 ++ k+++++ k+r+ tk+g+Wk+tg d+e+ +++l+g+kktLvf+ +++++ maker-scaffold07067-augustus-gene-0.6-mRNA-3 79 QSLKHQNDNPKKRKrgqkqelvnrqTKAGFWKSTGPDREIEF-GESLIGMKKTLVFHirsNKKEE 142 *98887777667888888888************9.999*******88767899 PP NAM 115 kgektdWvmheyrl 128 k+++t+Wvmheyr maker-scaffold07067-augustus-gene-0.6-mRNA-3 143 KARRTNWVMHEYRT 156 999*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-40	10	161	IPR003441	NAC domain
PROSITE profile	PS51005	39.942	15	175	IPR003441	NAC domain
Pfam	PF02365	1.7E-23	16	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MAFLGIMEKL SLDHLPPGVR FSPKDPEVIE LYLKKKITGH DEDTWFIPEI EFYKDEPWDL 60 PIKSGIATKD QEWFFFTEQS LKHQNDNPKK RKRGQKQELV NRQTKAGFWK STGPDREIEF 120 GESLIGMKKT LVFHIRSNKK EEKARRTNWV MHEYRTTQKE FDGKHPGQVG FCNSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-27	4	158	4	144	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-27	4	158	4	144	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-27	4	158	4	144	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-27	4	158	4	144	NO APICAL MERISTEM PROTEIN
3swm_A	3e-27	4	158	7	147	NAC domain-containing protein 19
3swm_B	3e-27	4	158	7	147	NAC domain-containing protein 19
3swm_C	3e-27	4	158	7	147	NAC domain-containing protein 19
3swm_D	3e-27	4	158	7	147	NAC domain-containing protein 19
3swp_A	3e-27	4	158	7	147	NAC domain-containing protein 19
3swp_B	3e-27	4	158	7	147	NAC domain-containing protein 19
3swp_C	3e-27	4	158	7	147	NAC domain-containing protein 19
3swp_D	3e-27	4	158	7	147	NAC domain-containing protein 19
4dul_A	3e-27	4	158	4	144	NAC domain-containing protein 19
4dul_B	3e-27	4	158	4	144	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913062.1	1e-105	NAC domain containing protein 50-like isoform X2
TrEMBL	A0A2I4F938	8e-49	A0A2I4F938_JUGRE; LOW QUALITY PROTEIN: NAC domain-containing protein 91-like
TrEMBL	A0A2N9EGM8	2e-48	A0A2N9EGM8_FAGSY; Uncharacterized protein
STRING	XP_006441279.1	1e-45	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	3e-43	NAC domain containing protein 62