PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07098-snap-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 179aa    MW: 19769 Da    PI: 10.0979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07098-snap-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-13555146
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                               +++WT eE+e l  +v+++G+g Wk I r          R+  ++k++w++
  maker-scaffold07098-snap-gene-0.18-mRNA-1  5 KQKWTSEEEEALRAGVAKHGTGKWKDIQRDPEfnpflSSRSNIDLKDKWRN 55
                                               79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.994161IPR017930Myb domain
SuperFamilySSF466895.66E-17258IPR009057Homeodomain-like
SMARTSM007172.1E-8459IPR001005SANT/Myb domain
PfamPF002492.3E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-15556IPR009057Homeodomain-like
CDDcd116604.32E-23656No hitNo description
SuperFamilySSF467857.07E-12116178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.8E-12116177IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150419.383118179IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.5E-11119178IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.3E-9121178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKD IQRDPEFNPF LSSRSNIDLK DKWRNMSVSA  60
GGQGPREKSR SSKAKANPDT PTTTPSSVQT SVAASVAHDT AADPNVDDST KSLTDGKNAS  120
SYNAMIFEAL STLNEPNGLD TSKIVSFIEQ RHEVPQNFRR LLSTRLRRLV TQDKLEKVV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023890120.11e-128single myb histone 4-like
SwissprotQ8W1192e-54SMH4_MAIZE; Single myb histone 4
TrEMBLA0A2P5ASI43e-95A0A2P5ASI4_PARAD; Telomeric repeat-binding factor
STRINGXP_010090083.12e-88(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-50MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]