PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07150-snap-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 439aa    MW: 48558.8 Da    PI: 6.7678
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07150-snap-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.5e-08161182426
                                               ---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                               + C f+ + GtC yGd+C++ H+
  maker-scaffold07150-snap-gene-0.5-mRNA-1 161 RVCEFWVQ-GTCVYGDQCPYLHS 182
                                               78******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8593157IPR000571Zinc finger, CCCH-type
SMARTSM003560.00133356IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5157183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986157184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-7158182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5161182IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-5161182IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.24E-43183436IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.5E-14188258IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.5E-7188227IPR001680WD40 repeat
PfamPF004004.7E-5191227IPR001680WD40 repeat
PROSITE profilePS5008213.583195236IPR001680WD40 repeat
PROSITE profilePS5029419.96195439IPR017986WD40-repeat-containing domain
PRINTSPR003204.1E-7214228IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780214228IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.103.4E-29259438IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM0032062267304IPR001680WD40 repeat
SMARTSM003205.0E-8312350IPR001680WD40 repeat
PfamPF004001.5E-5315350IPR001680WD40 repeat
PROSITE profilePS5008211.979319359IPR001680WD40 repeat
PRINTSPR003204.1E-7337351IPR020472G-protein beta WD-40 repeat
SMARTSM003201.4E-4353390IPR001680WD40 repeat
PfamPF004000.0031354389IPR001680WD40 repeat
PRINTSPR003204.1E-7377391IPR020472G-protein beta WD-40 repeat
SMARTSM0032069396437IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEIKTARRGP QGKGNSVFDR LGAGQGGHLN NSSNKICKFW LSGRCLKNPC RFAHSETPDV  60
ATIHRPRQTP YYPRSSNALV SNTWRRAPRN SQNVQEKVVN HMSSENVPRK SESDLEDIKR  120
KSPESISESP SECSVVEKDS NLENVVEEKP LEHVPTKTAE RVCEFWVQGT CVYGDQCPYL  180
HSWFRGDKFK RLAELQGHNK AVNGIALPLR CNKLCSGSSD GTIRLWDCHT GQCANVINLG  240
DEVGSVCSEG PWLFVGMPNV VKVWNTESGA EYSLNGPVGQ VNALESVNDL LFAGVEDGVI  300
LAWKGTCKSN LTFQLAATLK GHTHGITSLV VGGGNRLYSG SKDHTIRVWD HENWQCIMTL  360
IGHDDVVKSL MCWDKYLFSG SLDCTIKVWA STDDGSLEVI YTHSEEQGIL ALSGMTDPDV  420
KPILYCSCSD KSVHLYELP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-211904396323Tako8
6g6n_A3e-211904396323Tako8
6g6n_B3e-211904396323Tako8
6g6n_C3e-211904396323Tako8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896327.10.0zinc finger CCCH domain-containing protein 48-like
TrEMBLA0A2N9IQ390.0A0A2N9IQ39_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF231645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-112zinc finger WD40 repeat protein 1