PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07217-augustus-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 217aa    MW: 24569.7 Da    PI: 8.6012
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07217-augustus-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.5e-194091556
                                                   SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                                    +f++eq++ Le+ Fe++  +  +++ +LA++lgL+ rq+ +WFqNrRa++k
  maker-scaffold07217-augustus-gene-0.12-mRNA-1 40 SRFSAEQIKSLESSFESETRLEPRKKVQLARELGLQPRQIAIWFQNRRARWK 91
                                                   67*************************************************9 PP
2HD-ZIP_I/II124.16.7e-4038128292
                                    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65 
                                                    +k r+s+eq+k+LE+sFe+e++Lep++Kv+lareLglqprq+a+WFqnrRAR+k+kq+E++y++
  maker-scaffold07217-augustus-gene-0.12-mRNA-1  38 NKSRFSAEQIKSLESSFESETRLEPRKKVQLARELGLQPRQIAIWFQNRRARWKSKQIENEYKT 101
                                                    699************************************************************* PP

                                    HD-ZIP_I/II  66 LkraydalkeenerLekeveeLreelk 92 
                                                    Lk++yd+l+++ e+L+ke+++L  +l+
  maker-scaffold07217-augustus-gene-0.12-mRNA-1 102 LKDNYDNLASQFESLKKEKQSLLIQLQ 128
                                                    **********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-182894IPR009057Homeodomain-like
SMARTSM003893.2E-163197IPR001356Homeobox domain
PROSITE profilePS5007117.5723393IPR001356Homeobox domain
CDDcd000862.55E-153994No hitNo description
PfamPF000461.4E-163991IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.3E-2040100IPR009057Homeodomain-like
PRINTSPR000314.9E-66473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000314.9E-67389IPR000047Helix-turn-helix motif
PfamPF021831.6E-1393134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEGREYMYSP AVPEGKYEIF TCQQPPQTAR KKKNKIVNKS RFSAEQIKSL ESSFESETRL  60
EPRKKVQLAR ELGLQPRQIA IWFQNRRARW KSKQIENEYK TLKDNYDNLA SQFESLKKEK  120
QSLLIQLQIL GDLLEKTHGG NEDSKGLEGN SAVCTSNNVN TKGETKAKLS CFQEGMEGSA  180
VMCPHEDKTG IGNFGEEGQG LLNVTEHVHG PFASLEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593RRARWKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881584.11e-151homeobox-leucine zipper protein ATHB-7-like isoform X3
SwissprotP468975e-50ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2N9IS721e-110A0A2N9IS72_FAGSY; Uncharacterized protein
STRINGcassava4.1_015051m3e-70(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-42homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]