PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07299-augustus-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 255aa    MW: 28205.1 Da    PI: 7.5104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07299-augustus-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-1371118354
                                                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
                                            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 
                                                    ++h e+ErrRR+riNs +++Lr l+P a     +K ++Ka+ L +++ ++k+L
  maker-scaffold07299-augustus-gene-0.21-mRNA-1  71 KSHCEAERRRRARINSHLDTLRGLVPGA-----RKvMDKASLLAEVISHMKEL 118
                                                    58*************************9.....677***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.45368118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-1171118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1371127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1372127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1274124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.12E-481120No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-5156221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEPFAWSSNT IAFGSDGLVK DELLVNSSVV RNGSDSSSSL VLDSERSELV EARMKLERKG  60
GTAERTIAAL KSHCEAERRR RARINSHLDT LRGLVPGARK VMDKASLLAE VISHMKELKR  120
SAEEASDGFV IPRDFDEVIV EREDGFDGDP YSIRASLCCD FKPGILSDLK QALNGLHLII  180
IRAEIATMGG RMKNVLVMTN RKEGEVNHSE VRQALRSVLD KFSGSQEFLL GTTFPNKRQR  240
ISIFNCSSSS SLGDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023890007.11e-155transcription factor bHLH30-like isoform X1
TrEMBLA0A2N9J4601e-120A0A2N9J460_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s11870.18e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.15e-32basic helix-loop-helix 32