PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07391-augustus-gene-0.4-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 447aa    MW: 49171.3 Da    PI: 7.26
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07391-augustus-gene-0.4-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16137182147
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                   rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  maker-scaffold07391-augustus-gene-0.4-mRNA-2 137 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 182
                                                   899*****************************.***********996 PP
2Myb_DNA-binding55.51.3e-17189232146
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                   r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  maker-scaffold07391-augustus-gene-0.4-mRNA-2 189 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 232
                                                   678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201132183IPR017930Myb domain
SMARTSM007173.3E-14136185IPR001005SANT/Myb domain
PfamPF002497.8E-16137182IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-28137230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-25138190IPR009057Homeodomain-like
CDDcd001674.33E-13140181No hitNo description
PROSITE profilePS5129426.929184238IPR017930Myb domain
SMARTSM007171.8E-14188236IPR001005SANT/Myb domain
PfamPF002492.6E-14189231IPR001005SANT/Myb domain
CDDcd001671.05E-11191231No hitNo description
Gene3DG3DSA:1.10.10.601.7E-20191237IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MANNYAIYAP ENNPNGLSCY SSTPCSTSSS MGMVYADMGS LSLSPKYGVA STISSSQESN  60
LSKSSHEVEN HGRPCWGALP FMGKKNSNIT RSFEETHNSN AGEGKVSDSS DGFEQNNDKN  120
LVSGKDIDSG QSKLCARGHW RPAEDTKLKE LVALYGPQNW NLIAEKLEGR SGKSCRLRWF  180
NQLDPRINRR AFSEEEEERL MQAHRIYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE  240
QSNAYRRRKL GQSVFRRMEE NPSLVCGDTA TRTEPLTYCL NLPNGGLNNN ITRFPFGAFN  300
GGGGGGVDYN LNGLNGSPHL TNGGEAISST KVPPYSGFCA LQQTPFDFFT GSNSSDIMGR  360
FSHGRSWDRP SDEANLSGFY SHYPPFMLAM QQSGNDNPYD YLEPSATPTA QVSASEPSSS  420
SATETRVGSQ FETVPPPFID FLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-341372377107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894953.10.0transcription factor MYB105-like
TrEMBLA0A2N9J6190.0A0A2N9J619_FAGSY; Uncharacterized protein
STRINGVIT_01s0026g02600.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-79myb domain protein 105