PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07673-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 201aa    MW: 21917 Da    PI: 8.9584
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07673-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.71.8e-42181171100
                                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 
                                                   +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA
  maker-scaffold07673-augustus-gene-0.9-mRNA-1  18 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEA 82 
                                                   7**************************************************************** PP

                                        DUF260  66 earardPvyGavgvilklqqqleqlkaelallkee 100
                                                   ++r+rdPvyG++g i++lqqq+++l+ael+++++e
  maker-scaffold07673-augustus-gene-0.9-mRNA-1  83 NVRLRDPVYGCMGAISALQQQVQSLQAELNAVRTE 117
                                                   ******************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.77517118IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-4218115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRRRHMLGPP GTLNTITPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HKVFGASNVS  60
KMLMEVPESQ RADAANSLVY EANVRLRDPV YGCMGAISAL QQQVQSLQAE LNAVRTEILK  120
YKYREANIIP SSHHHHHHLA LLTSSGAVSI AAPPPTPPPT TPPPPPPPLP LNSSSSSMYN  180
QTITSAADYS TISSDNVSYF G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-48101323125LOB family transfactor Ramosa2.1
5ly0_B4e-48101323125LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925198.11e-121LOB domain-containing protein 15
SwissprotQ8L5T53e-76LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A2N9J7V91e-112A0A2N9J7V9_FAGSY; Uncharacterized protein
STRINGXP_008369319.11e-105(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-78LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]