PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07841-snap-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 235aa    MW: 27179.2 Da    PI: 6.5172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07841-snap-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-141461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+W+ eEd +l  +++++G  +W+  ++  g+ R++k+c++rw++yl
  maker-scaffold07841-snap-gene-0.7-mRNA-1 14 KGAWSVEEDNKLRSYIQRFGHWNWRELPKFAGLSRCGKSCRLRWLNYL 61
                                              79******************99************************97 PP
2Myb_DNA-binding52.89.2e-1767111147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               rg+ T+eE++ +++++++lG++ W+ Ia+ ++ gR+++++k++w+ +
  maker-scaffold07841-snap-gene-0.7-mRNA-1  67 RGNYTEEEELMIIKLHEELGNK-WSMIAASLP-GRSDNDIKNHWHAH 111
                                               899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.941961IPR017930Myb domain
SuperFamilySSF466891.76E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-101363IPR001005SANT/Myb domain
PfamPF002493.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-221568IPR009057Homeodomain-like
CDDcd001671.94E-81661No hitNo description
PROSITE profilePS5129424.50562116IPR017930Myb domain
SMARTSM007176.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.3E-1567111IPR001005SANT/Myb domain
CDDcd001674.57E-1169112No hitNo description
Gene3DG3DSA:1.10.10.608.5E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVRAPIYDKN GLKKGAWSVE EDNKLRSYIQ RFGHWNWREL PKFAGLSRCG KSCRLRWLNY  60
LQPDLKRGNY TEEEELMIIK LHEELGNKWS MIAASLPGRS DNDIKNHWHA HLKKNTKKNP  120
TTSKMKTLSN EAYQHDADIA NKTEADSFVS NSPSYQVQEN SQLPLETFSS KFSYLSFDNA  180
PLSSINWTNN YPESLADGGF SASQSCYNEG IDSIYEAMQE FENFQRINED PYLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881680.11e-157transcription factor MYB13-like
SwissprotQ6K1S61e-52MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A2N9J0V51e-111A0A2N9J0V5_FAGSY; Uncharacterized protein
STRINGEOX992639e-73(Theobroma cacao)
STRINGcassava4.1_023710m1e-73(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-53myb domain protein 63
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]