PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07957-augustus-gene-0.12-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 355aa    MW: 40002.8 Da    PI: 8.0802
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07957-augustus-gene-0.12-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-1248104256
                                            AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                                                     ++GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g+
  maker-scaffold07957-augustus-gene-0.12-mRNA-2  48 IFRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWGH 104
                                                    69******************99998898888888********************997 PP
2AP251.23e-16146197155
                                            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  maker-scaffold07957-augustus-gene-0.12-mRNA-2 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 197
                                                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1447113IPR016177DNA-binding domain
SMARTSM003802.5E-1948117IPR001471AP2/ERF domain
PROSITE profilePS5103217.91248111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-1248112IPR001471AP2/ERF domain
PfamPF008472.1E-848104IPR001471AP2/ERF domain
PRINTSPR003672.2E-54960IPR001471AP2/ERF domain
CDDcd000184.98E-23146207No hitNo description
SuperFamilySSF541711.24E-17146207IPR016177DNA-binding domain
PfamPF008475.5E-12146197IPR001471AP2/ERF domain
PROSITE profilePS5103218.136147205IPR001471AP2/ERF domain
SMARTSM003802.9E-24147211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17147206IPR001471AP2/ERF domain
PRINTSPR003672.2E-5187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAKRSVKNTA NANNNSNNNT NTNNPATTKA KRTRKSIPRD SPPQRSSIFR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QGAYDDEEAA AHAYDLAALK YWGHDTILNF QLSTYEEELK  120
EMDSQSKEEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAATAYDM AAIEYRGLSA VTNFNLSRYI KWLRPNNNQN NPNNHEPNSN DDLNPIITPN  240
TNNELGQSFI SQQASSSASN TPQAPPPIRP SGASASSALG LLLQSSKFKE MMERTSVIDN  300
PSTPQESDPP RRTFPDDIQT YFDCQDSGSY AEGDDIIFGD TNSFATPIFH CELEP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873878.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-125AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2N9IV460.0A0A2N9IV46_FAGSY; Uncharacterized protein
STRINGcassava4.1_025233m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-106ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]