PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold08043-augustus-gene-0.8-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 253aa MW: 28836.1 Da PI: 4.9115

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold08043-augustus-gene-0.8-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.1	3.3e-44	5	138	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekew 58 ppGfrF Pt+eelv++yL++k+eg + ++++i+ vdiy+++Pw+Lp+ ++++ ++w maker-scaffold08043-augustus-gene-0.8-mRNA-1 5 PPGFRFYPTEEELVSFYLHNKLEGARedlnRVMDRIIPVVDIYDSKPWELPQfsgdLCHGDPEQW 69 9*********************99666433445799*********656764455777 PP NAM 59 yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123 +fF++r++++a+g r++r t++gyWkatg+ + v+s++++ +glk+t+vfy+grap+g+kt+W m maker-scaffold08043-augustus-gene-0.8-mRNA-1 70 FFFIPRQESEARGGRPRRLTQTGYWKATGSPNYVYSSNNRIIGLKRTMVFYNGRAPNGSKTEWKM 134 *************************************************************** PP NAM 124 heyr 127 +ey+ maker-scaffold08043-augustus-gene-0.8-mRNA-1 135 NEYK 138 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-48	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	49.088	4	166	IPR003441	NAC domain
Pfam	PF02365	3.2E-23	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEDFPPGFRF YPTEEELVSF YLHNKLEGAR EDLNRVMDRI IPVVDIYDSK PWELPQFSGD 60 LCHGDPEQWF FFIPRQESEA RGGRPRRLTQ TGYWKATGSP NYVYSSNNRI IGLKRTMVFY 120 NGRAPNGSKT EWKMNEYKAI DGEVPASTSA TPTLRQEFSL CRVYKKSKCL RAFDRRPPGV 180 IVNEPAAQQV PQGDEATPSR LNPSLTERIS SPDSSSSGDQ GQLSQPGEST GNMAVDNETF 240 WDFEQLNWFQ GLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	4	166	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	4	166	20	168	NAC domain-containing protein 19
3swm_B	2e-33	4	166	20	168	NAC domain-containing protein 19
3swm_C	2e-33	4	166	20	168	NAC domain-containing protein 19
3swm_D	2e-33	4	166	20	168	NAC domain-containing protein 19
3swp_A	2e-33	4	166	20	168	NAC domain-containing protein 19
3swp_B	2e-33	4	166	20	168	NAC domain-containing protein 19
3swp_C	2e-33	4	166	20	168	NAC domain-containing protein 19
3swp_D	2e-33	4	166	20	168	NAC domain-containing protein 19
4dul_A	2e-33	4	166	17	165	NAC domain-containing protein 19
4dul_B	2e-33	4	166	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023884559.1	1e-179	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-79	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2I4HD09	1e-132	A0A2I4HD09_JUGRE; NAC domain-containing protein 90-like
STRING	VIT_08s0007g02940.t01	1e-114	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-79	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]