PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08283-snap-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 289aa    MW: 32058.7 Da    PI: 7.5818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08283-snap-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-172471148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg+WT+eEde+l +++k+ G g+W+t +++ g+ R++k+c++rw +yl
  maker-scaffold08283-snap-gene-0.7-mRNA-1 24 RGPWTPEEDEILSNYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 71
                                              89******************************99************97 PP
2Myb_DNA-binding48.52e-1577122148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  maker-scaffold08283-snap-gene-0.7-mRNA-1  77 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 122
                                               678889****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-221573IPR009057Homeodomain-like
PROSITE profilePS5129416.451971IPR017930Myb domain
SuperFamilySSF466891.39E-2821118IPR009057Homeodomain-like
SMARTSM007177.4E-132373IPR001005SANT/Myb domain
PfamPF002496.2E-152471IPR001005SANT/Myb domain
CDDcd001674.65E-112671No hitNo description
PROSITE profilePS5129424.57872126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2474127IPR009057Homeodomain-like
SMARTSM007173.4E-1476124IPR001005SANT/Myb domain
PfamPF002496.3E-1478122IPR001005SANT/Myb domain
CDDcd001677.94E-1282122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSNPSSGGGS TSKTPCCSKV GIKRGPWTPE EDEILSNYIK REGEGRWRTL PKRAGLLRCG  60
KSCRLRWMNY LRPSVKRGRI APDEEDLILR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT  120
HLSKKLINQG IDPRTHKPLV VNPNPNNSPE VIIAHDHAAS ISNPNPISNL SPGILEETGG  180
SSLVSGIQIS DANDQLGQYQ NLVANDISNT QNWHNSDGAM TMGLRGGYVQ GNEENYIENS  240
NEDTFSSFLD SLINDNMFVN QQQQQPTFNP LISSSSSAPT FNHAAIWEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24241267108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ2074273e-89KJ207427.1 Quercus rubra microsatellite REO_010 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891874.10.0transcription repressor MYB5-like
TrEMBLA0A2N9JB871e-154A0A2N9JB87_FAGSY; Uncharacterized protein
STRINGPOPTR_0013s05300.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-74myb domain protein 5