PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08290-augustus-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 296aa    MW: 32367.6 Da    PI: 8.8278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08290-augustus-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.8e-1676121247
                                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    +rWT+eE++l++ + +qlG+++Wk I++++ +++t+ q+ s+ qky
  maker-scaffold08290-augustus-gene-0.12-mRNA-1  76 KRWTEEEHQLFLTGLNQLGKHDWKEISQKFVTTKTPAQIASHAQKY 121
                                                    69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.16670126IPR017930Myb domain
SuperFamilySSF466895.81E-1672126IPR009057Homeodomain-like
SMARTSM007174.7E-1174124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-976120IPR009057Homeodomain-like
CDDcd001675.67E-1077122No hitNo description
TIGRFAMsTIGR015571.2E-1677125IPR006447Myb domain, plants
PfamPF002491.1E-1277121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVRERKCSQC GLTGHNFRTC TTSVTSNNAN NNTNAAACIK VFGVFLQNNV NGNVENNKSQ  60
VVREPSIAID QKTKVKRWTE EEHQLFLTGL NQLGKHDWKE ISQKFVTTKT PAQIASHAQK  120
YFLRQAETNK MKRRPSVFDL SLQNEAEISP SAPKDCQVSQ TKKSDAESSS ESLVLDIPPL  180
AQIPASVCGA PSYCQIPSMV GMPGSALFIP NPMVNFASQS HLCWLPGTQQ TFCTRASGVI  240
DPSDIPSPPS FRRSLSDLGN RLSSIARDVE ELTIGQPQTS RGINVSTQTS GAIRVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900458.11e-102uncharacterized protein LOC112012303
TrEMBLA0A2N9EUP94e-59A0A2N9EUP9_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-29MYB_related family protein