PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08431-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 151aa    MW: 17311.8 Da    PI: 7.2055
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08431-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.41.8e-4266143178
                                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STT CS
                                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrr 65 
                                                   +Cq+e+C++dl++ak+yhrrhkvC++h+kapvv v+g++qrfCqqCsrfh+l+efDe+krsCrrr
  maker-scaffold08431-augustus-gene-0.9-mRNA-1  66 TCQAEDCNVDLTDAKHYHRRHKVCDFHAKAPVVSVAGIQQRFCQQCSRFHQLTEFDESKRSCRRR 130
                                                   6**************************************************************** PP

                                                   TT-------S--- CS
                                           SBP  66 Lakhnerrrkkqa 78 
                                                   La+hnerrrk+++
  maker-scaffold08431-augustus-gene-0.9-mRNA-1 131 LAGHNERRRKSSS 143
                                                   **********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375754.7E-571151IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.105.2E-3659128IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.58264141IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.79E-4065145IPR004333Transcription factor, SBP-box
PfamPF031102.8E-3267140IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
METSKAEEKR SFKYKTEDED DDDDDDEYTN NELGSGEEER RKRMMTPSPS TKKVSGSGGG  60
GSAPPTCQAE DCNVDLTDAK HYHRRHKVCD FHAKAPVVSV AGIQQRFCQQ CSRFHQLTEF  120
DESKRSCRRR LAGHNERRRK SSSEFHREGS H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-3560140484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921166.11e-84squamosa promoter-binding protein 1 isoform X1
SwissprotQ387413e-49SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A2P6Q4832e-53A0A2P6Q483_ROSCH; Squamosa promoter-binding-like protein
STRINGXP_008225122.11e-52(Prunus mume)
STRINGEMJ133761e-52(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-40squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]