PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08829-snap-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 252aa    MW: 28091 Da    PI: 5.8359
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08829-snap-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.5e-32189243155
                                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                               k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  maker-scaffold08829-snap-gene-0.9-mRNA-1 189 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMDTDGLTIFHVKSHLQKYRI 243
                                               68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.012186246IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-29187244IPR009057Homeodomain-like
SuperFamilySSF466891.79E-17187243IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-24189244IPR006447Myb domain, plants
PfamPF002497.3E-9193242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNTHKIDCRE QVNQSNGVIN DCSSEFGNQS FEFLGYKQPW HMETCFQPLT MEGGSQQQYI  60
GPAKSSSTIM SHSESPASAF FATERCMGFP QYEGEVGNPS MSSQFSRTYD SQFPAYQSAG  120
EDYSIDTAHP AEPNFDLRNT LQAIGNYNSY DSPLGQLNFS SQQEKHSPRE SVSITSGNSA  180
STGAVLSSKT RIRWTQDLHE KFVECVNRLG GAEKATPKAI LKLMDTDGLT IFHVKSHLQK  240
YRIAKYMPDS TE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-24189246259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-24189246259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-24189246259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-24189246259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-24189246259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-24189246259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-24189246259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-24189246259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906743.11e-118myb family transcription factor PHL5-like isoform X2
SwissprotQ0WVU33e-38PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A2I4GI921e-114A0A2I4GI92_JUGRE; myb family transcription factor PHL5-like
STRINGcassava4.1_023877m2e-83(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.23e-41G2-like family protein