PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08966-snap-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 261aa    MW: 29996.9 Da    PI: 5.5741
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08966-snap-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.52.1e-0832724990
                                       FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                                               ++e+ ++ +t tgC+a++  + + +g+w+v++++  HnHela
  maker-scaffold08966-snap-gene-0.12-mRNA-1 32 DDEQFKKLQTMTGCEASILFTVT-NGEWKVIHFNPTHNHELA 72
                                               677889999************99.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-62972IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDIRVNEEGV EDIETLLGMV VHRFPRDSDN LDDEQFKKLQ TMTGCEASIL FTVTNGEWKV  60
IHFNPTHNHE LAKPEEMSFL RLKQKIIDAQ LEFESSWDAL LRDYNLVGNK WLNTSYENRE  120
RWCSVFSHNI FSARIKASAR SESVNNVFQH MACKTMRLTK FVEELEEDFH CKQGTSSQIV  180
KNCGLLEHAL SVYTPTFFKR FELGIASTLG VTHQDVYSDG VSFTYEVIEG GGRRAHVVQF  240
NSSNNVVTCS CKMFETLELL C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874110.11e-100protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A251NIG21e-50A0A251NIG2_PRUPE; Uncharacterized protein
TrEMBLA0A251QFY51e-50A0A251QFY5_PRUPE; Uncharacterized protein
TrEMBLM5WL036e-51M5WL03_PRUPE; Uncharacterized protein (Fragment)
TrEMBLM5X4777e-51M5X477_PRUPE; Uncharacterized protein
STRINGEMJ099431e-51(Prunus persica)
STRINGEMJ207291e-51(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-19FAR1-related sequence 5