PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09066-snap-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 198aa    MW: 23092.3 Da    PI: 9.6764
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09066-snap-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.44.1e-1744121290
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                                fYn YAk+ GF +r+ +s+ks+r+++i++r + C     +++++ +           r  C+a++ +k
  maker-scaffold09066-snap-gene-0.12-mRNA-1  44 FYNMYAKREGFLTRVLSSRKSERDRSIISRGLGCRGGSVNRKKDGQ-----------REVCTAMILLK 100
                                                9*********************************877777666555...........999******** PP

                                       FAR1  70 kekdgkwevtkleleHnHela 90 
                                                +ek+g+w+v k++ +HnH+l+
  maker-scaffold09066-snap-gene-0.12-mRNA-1 101 REKSGRWVVRKCVRDHNHALV 121
                                                *******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1444121IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEVDDGNGRL ETSAAGEQCT CDVDTNQEPY VGMDFESEEA ARAFYNMYAK REGFLTRVLS  60
SRKSERDRSI ISRGLGCRGG SVNRKKDGQR EVCTAMILLK REKSGRWVVR KCVRDHNHAL  120
VVQLQKSRRI IDEKDRKIQE LTTELRVKKR LSAAYREQLL KLMKDVEDHN EHLRTKVELV  180
FDNLREFEAK RKEVSDRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892019.11e-136protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL89e-17FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2I4ET531e-103A0A2I4ET53_JUGRE; protein FAR1-RELATED SEQUENCE 12-like isoform X2
STRINGVIT_05s0102g00470.t012e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-52FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]