PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09076-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YB
Protein Properties Length: 148aa    MW: 16596.5 Da    PI: 6.1642
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09076-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB51.42.6e-1612105595
                                          NF-YB   5 drflPianvsrimkkvlPana...kiskdaketvqecvsefisfvtseasdkcqrekrktingd 65 
                                                     ++lP + v r++k+ l  ++    + kda     e +  fi ++++ a+d c++ kr+tin+d
  maker-scaffold09076-augustus-gene-0.11-mRNA-1  12 AEELPRTIVRRVVKEKLSHDGddmSVHKDALLAFSESARIFIHYLSATANDICKESKRQTINAD 75 
                                                    56799999*********9887333589999999******************************* PP

                                          NF-YB  66 dllwalatlGfedyveplkvylkkyreleg 95 
                                                    d+l al ++ f +++ plk+ l+++r+ ++
  maker-scaffold09076-augustus-gene-0.11-mRNA-1  76 DVLTALQEIEFSHFLGPLKASLHEFRQKNA 105
                                                    **************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.9E-355143IPR009072Histone-fold
PfamPF008081.9E-111481IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.0E-2615125IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MESENQKVIS EAEELPRTIV RRVVKEKLSH DGDDMSVHKD ALLAFSESAR IFIHYLSATA  60
NDICKESKRQ TINADDVLTA LQEIEFSHFL GPLKASLHEF RQKNAGKKAG AAKEKEEKKK  120
RKLEELSHDN GGGERVENED NQDGTGHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112121KEKEEKKKRK
2117122KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915521.19e-83DNA polymerase epsilon subunit 3
TrEMBLA0A2N9ISH85e-62A0A2N9ISH8_FAGSY; Uncharacterized protein
STRINGGorai.009G085200.12e-59(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.16e-39nuclear factor Y, subunit B11