PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09384-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 208aa    MW: 23913.4 Da    PI: 10.1955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09384-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-0695117123
                                                   EEETTTTEEESSHHHHHHHHHHT CS
                                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                   + C++C+k F r  nL+ H r H
  maker-scaffold09384-augustus-gene-0.5-mRNA-1  95 FICEICNKGFQRDQNLQLHRRGH 117
                                                   89*******************88 PP
2zf-C2H214.30.00012171193123
                                                   EEETTTTEEESSHHHHHHHHHHT CS
                                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                   +kC +C+k++  +s+ k H +t+
  maker-scaffold09384-augustus-gene-0.5-mRNA-1 171 WKCDKCSKRYAVQSDWKAHSKTC 193
                                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-794117No hitNo description
Gene3DG3DSA:3.30.160.604.3E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02295117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84595117IPR007087Zinc finger, C2H2
PfamPF121711.9E-595117IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM00355210136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-5159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-7166191No hitNo description
SMARTSM00355140171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MMKGLMFQVQ QQQQQLKQQV VEENMSNLTS ASGEASVSSG NRTEIGNNYS QQYFAPPPTQ  60
TQPVMKKKRN LPGNPDPEAE VISLSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP  120
WKLKQRTSKE IRKKVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY  180
AVQSDWKAHS KTCGTREYRC DCGTLFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-22167208344Zinc finger protein JACKDAW
5b3h_F2e-22167208344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121133KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-145AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882792.11e-153protein indeterminate-domain 7 isoform X2
SwissprotQ9LRW71e-107IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A2I4H0501e-137A0A2I4H050_JUGRE; protein indeterminate-domain 7-like isoform X1
STRINGXP_008228284.11e-133(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-108indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]