PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09718-snap-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 419aa    MW: 47798.3 Da    PI: 8.442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09718-snap-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg+W++eEd++l d+++  G g W+  +++ g++R++k+c++rw +yl
  maker-scaffold09718-snap-gene-0.7-mRNA-1 14 RGAWSAEEDKILTDYIATNGEGKWRNLPKEAGLKRCGKSCRLRWINYL 61
                                              89********************************************97 PP
2Myb_DNA-binding50.74.1e-1667112148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               rg+ T  E++l+++++k+lG++ W++Ia++++ gRt++++k++w+++l
  maker-scaffold09718-snap-gene-0.7-mRNA-1  67 RGNITSAEEDLIIRLHKLLGNR-WALIAKRLP-GRTDNEIKNYWNTVL 112
                                               7899******************.*********.************975 PP
3Myb_DNA-binding24.85e-082202422447
                                               HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding  24 WktIartmgkgRtlkqcksrwqky 47 
                                               W+ Ia++++ gRt++++k++w+++
  maker-scaffold09718-snap-gene-0.7-mRNA-1 220 WSIIAKRLP-GRTDNEIKNYWNSV 242
                                               *********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.722961IPR017930Myb domain
SuperFamilySSF466894.69E-2811108IPR009057Homeodomain-like
SMARTSM007171.4E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-221568IPR009057Homeodomain-like
CDDcd001673.16E-81661No hitNo description
PROSITE profilePS5129426.34762116IPR017930Myb domain
SMARTSM007177.5E-1766114IPR001005SANT/Myb domain
PfamPF002491.4E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2569116IPR009057Homeodomain-like
CDDcd001679.73E-1171112No hitNo description
SMARTSM007170.011196245IPR001005SANT/Myb domain
PROSITE profilePS500906.609220243IPR017877Myb-like domain
CDDcd001675.45E-5220243No hitNo description
PfamPF002499.2E-6220243IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-7220258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-11220260IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRSPCCSKV GMNRGAWSAE EDKILTDYIA TNGEGKWRNL PKEAGLKRCG KSCRLRWINY  60
LKPDIKRGNI TSAEEDLIIR LHKLLGNRWA LIAKRLPGRT DNEIKNYWNT VLKKKLSNKG  120
KEASDDNKKI KPSVKSVPEV VKTKAFRFTK VFVAPQQDKH EAFDDNNNNV LQEPIYSEND  180
NLEMELKSID RQQLLPLVSF DEDNSSNFAL NFSTEELLIW SIIAKRLPGR TDNEIKNYWN  240
SVLKKQLNNG KKASTEKTIL KPSDKTKLPK TKPHKTKPST TSSVYKYKVI KTKAFRCTKG  300
FVTSQLDKLE AFDNNNNMVI EEPLTKDIHL VNIDNVAKES KSSDDESALV FSEEDKSQNF  360
LLGFGIEELN ELLKCDNLDV DFWNLCMLDE SMEGEANNNG GANDILWSSL DNPLSFFEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4346501e-49AB434650.1 Fagus crenata FcMYB558 gene for transcription factor MYB558, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873416.11e-142transcription factor WER-like
TrEMBLB5UAQ51e-113B5UAQ5_FAGCR; Transcription factor MYB558
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-61myb domain protein 3