PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold10186-augustus-gene-0.11-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

GRAS

Protein Properties

Length: 243aa MW: 27239.7 Da PI: 8.1057

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold10186-augustus-gene-0.11-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	184	1.1e-56	3	242	163	350
GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............ 214 +L++ A++l++ f+fn+ ++++le+l+le+L+vk+gEala+++vlqlh+ll maker-scaffold10186-augustus-gene-0.11-mRNA-1 3 LQLTEKANNLNILFQFNP-IVSKLENLDLESLHVKTGEALAISSVLQLHSLLaidegmvrnspv 65 589*************.7999************************************* PP GRAS 215 ..........................................desvsleserdevLklvkslsP 236 s+s++s+ +++L+ +++lsP maker-scaffold10186-augustus-gene-0.11-mRNA-1 66 asknrpkvlhinqrplreflkkdlvsvgltclglgpalptssPLSLSVSSKMESFLSSLRGLSP 129 ************************************87556666778899****** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 k++v++eqea+hn+++++er+++++++y+alfd+l+++++ + +r+k+E++l+g+ei+n++ac maker-scaffold10186-augustus-gene-0.11-mRNA-1 130 KLIVITEQEANHNGPTLMERVVNSFKFYAALFDCLDSTVSGALIDRQKIEKMLFGEEIKNIIAC 193 ***********************************9999***************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 eg er+erhe+lekW rle aGF+ v++s + +ak +l+ ++ + y+ maker-scaffold10186-augustus-gene-0.11-mRNA-1 194 EGVERKERHEKLEKWILRLELAGFGRVHFSFLGMLKAKEILQSYDHQ-YN 242 *****************************************9955.76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.975	1	243	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-54	3	242	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDLQLTEKAN NLNILFQFNP IVSKLENLDL ESLHVKTGEA LAISSVLQLH SLLAIDEGMV 60 RNSPVASKNR PKVLHINQRP LREFLKKDLV SVGLTCLGLG PALPTSSPLS LSVSSKMESF 120 LSSLRGLSPK LIVITEQEAN HNGPTLMERV VNSFKFYAAL FDCLDSTVSG ALIDRQKIEK 180 MLFGEEIKNI IACEGVERKE RHEKLEKWIL RLELAGFGRV HFSFLGMLKA KEILQSYDHQ 240 YNV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002267910.1	1e-103	PREDICTED: scarecrow-like protein 3 isoform X1
Refseq	XP_010645688.1	1e-103	PREDICTED: scarecrow-like protein 3 isoform X1
Refseq	XP_010645689.1	1e-103	PREDICTED: scarecrow-like protein 3 isoform X2
Swissprot	Q9LPR8	5e-70	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A438GU36	1e-101	A0A438GU36_VITVI; Scarecrow-like protein 3
TrEMBL	A5APS5	1e-101	A5APS5_VITVI; Uncharacterized protein
TrEMBL	F6GX84	1e-101	F6GX84_VITVI; Uncharacterized protein
STRING	VIT_13s0019g01220.t01	1e-102	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-65	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]