PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold10367-snap-gene-0.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Nin-like

Protein Properties

Length: 255aa MW: 29542.9 Da PI: 10.0468

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold10367-snap-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.8	8.2e-27	122	171	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl maker-scaffold10367-snap-gene-0.10-mRNA-1 122 ARIALSDLAKYFDLPIVEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSL 171 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.145	106	191	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-22	124	171	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MPQCHSNPKL KSVPTIAVDL QIIFQLGCIM EDKEQSRFPK GETCQQNDDF YRQSRRSFPT 60 LQLDLNRLPY PVTEFESSED QQKEHCSPGS MLMFCSPFSS IGWKIAGVVH NKKKRAASEH 120 VARIALSDLA KYFDLPIVEA SRNLKVGLTV LKRKCREFGI PRWPHRKIKS LDSLIHDLQE 180 ETQRQQQKDK VAAMAVAKRQ KMLESEKENI ERKPFMELQC ETKKFRQDVF KRRHRARATG 240 NQDPSTSSHE STNKV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893564.1	1e-157	protein RKD5
Swissprot	O81791	2e-66	RKD5_ARATH; Protein RKD5
TrEMBL	A0A2N9HS37	1e-119	A0A2N9HS37_FAGSY; Uncharacterized protein
STRING	XP_010103258.1	1e-96	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	9e-69	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]