PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10447-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 538aa    MW: 56577.5 Da    PI: 7.476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10447-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.9e-10111155144
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                                                    r++W+++Ed+ l+ av++ G g+W+ I r     +Rt+ q+  rw
  maker-scaffold10447-augustus-gene-0.11-mRNA-1 111 RKPWSEDEDLELIAAVQKCGEGNWANILRGDFkGNRTATQLSQRW 155
                                                    789************************98422359***9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.065108163IPR017930Myb domain
SuperFamilySSF466891.15E-12108160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-13108158IPR009057Homeodomain-like
SMARTSM007176.8E-10110161IPR001005SANT/Myb domain
PfamPF002493.3E-8111155IPR001005SANT/Myb domain
CDDcd116602.75E-14112160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGGTAEILIF SCLFYGNGCF VQVLIASGLP SDTSLPTSSI VEAPLTINIP SGSSSRVSPS  60
ENSEATCSMQ GMNITVPVSV QKQPLPSAAA PHEVLDANGS ANGSIPLRRK RKPWSEDEDL  120
ELIAAVQKCG EGNWANILRG DFKGNRTATQ LSQRWAIIRK RRGKLNVGTN PSGSQLSEER  180
RAAHHAISLA LMPVKSLTAA RPAGTSTTSN SVLPTTTAEA VKIGSSSLQA KGQSQQGPVP  240
KKSSPVGSLG STEKSRVSAK KPLTKPGICS DSALRETAVA AGARIASPSD VASFIKATQA  300
KNAVHIKPTG VSSTKLPMPR GVSTQIETQT NVRYVGTGLE AASSSSHPAV TVIPIASHSG  360
SVKAVSPTIQ HSPSTFATSL KMSSEQTNIV SSTLPPEVLP KQEVKTAEEI KACASGNAPK  420
EQVQEDKVLS SDTETVCKIQ ITDIKNPNSS LNMKTDDSAE GAVVDDQAET RQNANENEMM  480
SSPVRGENQS APEVNYENHS ANEKQANLPS MIEDECGEKQ EVLIKIEAGN EIEGEKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112LRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910778.10.0uncharacterized protein LOC112022415
TrEMBLA0A2N9FA760.0A0A2N9FA76_FAGSY; Uncharacterized protein
STRINGXP_010086659.11e-132(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-39MYB_related family protein