PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10550-snap-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 253aa    MW: 29249.5 Da    PI: 5.7131
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10550-snap-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.1e-14148148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+W+ eEd +l  +++++G  +W+  ++  g+ R++k+c++rw++yl
  maker-scaffold10550-snap-gene-0.7-mRNA-1  1 KGAWSVEEDNKLRSYIQRFGHWNWRELPKFAGLSRCGKSCRLRWLNYL 48
                                              79******************99************************97 PP
2Myb_DNA-binding51.72e-165498147
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                              rg+ T+eEd  +++++++lG++ W+ Ia+ ++ gRt++++k++w+ +
  maker-scaffold10550-snap-gene-0.7-mRNA-1 54 RGNYTEEEDVMIIKLHEELGNK-WSMIAESLP-GRTDNDIKNYWHAH 98
                                              899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.78E-29195IPR009057Homeodomain-like
PROSITE profilePS5129415.691148IPR017930Myb domain
SMARTSM007178.9E-8150IPR001005SANT/Myb domain
PfamPF002493.7E-13148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-22255IPR009057Homeodomain-like
CDDcd001673.74E-8348No hitNo description
PROSITE profilePS5129423.38149103IPR017930Myb domain
SMARTSM007172.7E-1653101IPR001005SANT/Myb domain
PfamPF002498.8E-155498IPR001005SANT/Myb domain
CDDcd001674.23E-115699No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2556101IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
KGAWSVEEDN KLRSYIQRFG HWNWRELPKF AGLSRCGKSC RLRWLNYLQP DVKRGNYTEE  60
EDVMIIKLHE ELGNKWSMIA ESLPGRTDND IKNYWHAHLK KCTKKNPTTS KMKTLSNEAY  120
QHDTDIARKT KTDSSVSSSP SYQVQESSKL PLETSSSEFS YLSFDNAPLS GINWTAKDSL  180
ATLETLEQSF SDFWTEPFVM DNTYIQSNYP VSFADGGFSA SQSCYNEGID FIYKAMQEVE  240
NYKRINEDPY LVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-26110127126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881680.11e-172transcription factor MYB13-like
TrEMBLA0A2N9J0V51e-128A0A2N9J0V5_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s14130.16e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-49myb domain protein 63