PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10692-snap-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 162aa    MW: 19109.6 Da    PI: 9.5723
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10692-snap-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1318.7e-4191501128
                                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdk 66 
                                                lp+G+rF+P+d el+  yLkkk++g++ ++  +i+ ++ y+ +PwdLp k  +++e++ew+fF++++ 
  maker-scaffold10692-snap-gene-0.12-mRNA-1   9 LPRGVRFSPKDPELIELYLKKKITGNDEDT-WFIPGIEFYEDDPWDLPiKsGIATEDQEWFFFTEQSP 75 
                                                799************************888.78**************96347777999********** PP

                                        NAM  67 kyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektd 120
                                                k++++++k+r+           tk+g+Wk+tg+d+e++s +++l+g+kktLvfy   +++++k+ +t+
  maker-scaffold10692-snap-gene-0.12-mRNA-1  76 KHQKDTQKKRKrgqnqelvdrqTKAGFWKSTGRDREIKS-GESLTGMKKTLVFYtgsNKKEEKAIRTN 142
                                                ***99999998899*************************.999***********444446677779** PP

                                        NAM 121 Wvmheyrl 128
                                                Wvmheyr 
  maker-scaffold10692-snap-gene-0.12-mRNA-1 143 WVMHEYRT 150
                                                ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-407155IPR003441NAC domain
PROSITE profilePS5100540.239162IPR003441NAC domain
PfamPF023658.3E-2410149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEKLILGHLP RGVRFSPKDP ELIELYLKKK ITGNDEDTWF IPGIEFYEDD PWDLPIKSGI  60
ATEDQEWFFF TEQSPKHQKD TQKKRKRGQN QELVDRQTKA GFWKSTGRDR EIKSGESLTG  120
MKKTLVFYTG SNKKEEKAIR TNWVMHEYRT TQKEFDGKHP GQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-25814914139Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785QKDTQKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913083.11e-99NAC domain-containing protein 14-like isoform X3
TrEMBLA0A2N9EGM81e-44A0A2N9EGM8_FAGSY; Uncharacterized protein
STRINGGLYMA02G38710.12e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-42NAC transcription factor-like 9