PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11139-snap-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YA
Protein Properties Length: 340aa    MW: 38081.9 Da    PI: 8.6561
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11139-snap-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32174230158
                                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                               dep+YVN KQy++IlkRRq Rakle+++kl +ksrkpylheSRh hAl+R+RgsgGrF
  maker-scaffold11139-snap-gene-0.7-mRNA-1 174 DEPIYVNKKQYHAILKRRQFRAKLEAQNKL-IKSRKPYLHESRHLHALKRARGSGGRF 230
                                               79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-36172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.66173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.1E-27175230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-23176198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-23207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
TSSAHSLSSW FVYCPPFRNS TELQVQQSSI SRSLSLKMGN PPQHCHNTEQ LNFQFQDQDS  60
PSTQSTGQSY PEVVSMQESN PCGQGIVSPK SIFIETKEKP IGGIIRQFSL MGTQDLVFSS  120
SKLDHIQSIA CLQFPYSDPY YGLFAATFGH QMHPSQMIGM ATARVPLPLG FPDDEPIYVN  180
KKQYHAILKR RQFRAKLEAQ NKLIKSRKPY LHESRHLHAL KRARGSGGRF LNMKKLEESN  240
HTPTSHGLDD SGSPKLHLFA NMSESEVHQP ENYRDGASTT SCSDITSVSN SDNIFQQPEF  300
RFSGYPPHIG GTMHGRSVDM LRGASKEHHL TVLRCCSLNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20174234262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901031.10.0nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH21e-70NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2N9J0W21e-173A0A2N9J0W2_FAGSY; Uncharacterized protein
STRINGXP_008228224.11e-122(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-73nuclear factor Y, subunit A3