PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11208-augustus-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HB-other
Protein Properties Length: 157aa    MW: 18046.2 Da    PI: 4.361
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11208-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.92.3e-05901152651
                                                    -HHHHHHHHHHCTS-HHHHHHHHHHH CS
                                       Homeobox  26 saeereeLAkklgLterqVkvWFqNr 51 
                                                    +++++  LA+ +gL+++q+ +WF N+
  maker-scaffold11208-augustus-gene-0.10-mRNA-1  90 DESQKLALAEPTGLDQKQINNWFINQ 115
                                                    6788999****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-790136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-1290124IPR009057Homeodomain-like
CDDcd000862.35E-490123No hitNo description
PfamPF059207.0E-791115IPR008422Homeobox KN domain
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
CDRNVSSEEE VDVNTNLIDP QAEDRELKRS AFAQVQWIFR QSEAGIHEEK EERETAYRSQ  60
ATVAGLVEQA LQMTLPFGIY NTTTLLIPID ESQKLALAEP TGLDQKQINN WFINQIKRHW  120
KPSEDMQFVV MDATHPHYYV DNVLGNPFPM DISPTLL
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4792461e-59AM479246.2 Vitis vinifera contig VV78X069130.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881608.11e-51homeobox protein SBH1-like
SwissprotO222996e-46LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A2N9H8S91e-49A0A2N9H8S9_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_152.562e-51(Carica papaya)
STRINGPOPTR_0011s01590.12e-51(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.15e-44KNOX/ELK homeobox transcription factor