PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11283-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 175aa    MW: 20357.5 Da    PI: 9.9031
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11283-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.8e-16901661997
                                                   -HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                                            B3  19 pkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfv 80 
                                                   + kf++++  g  k   + +tl++++g++W+v + y + + +++ l+kGW  F k+n+L+egD++
  maker-scaffold11283-augustus-gene-0.9-mRNA-1  90 SAKFFTKYiiG--K---QFVTLQTTDGKQWQVLFYYhNYTYSAMRLGKGWVTFLKDNNLEEGDVC 149
                                                   56777777433..2...259**************88544555599******************** PP

                                                   EEEE-SSSEE..EEEEE CS
                                            B3  81 vFkldgrsefelvvkvf 97 
                                                   vF++++r+   l v++f
  maker-scaffold11283-augustus-gene-0.9-mRNA-1 150 VFEVIERKPIVLSVSIF 166
                                                   ***99988777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.2E-837169IPR003340B3 DNA binding domain
CDDcd100172.78E-1488166No hitNo description
Gene3DG3DSA:2.40.330.109.8E-1788167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-1589167IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-1391166IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139104169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAAISKTHQT KVKPNWNFDH HRASSSMAGR AWRPSQFFKI ILPSAMQHMK RRIFENFVME  60
FGDELSTVAT LTAPYGGIWQ LSLFLVQYVS AKFFTKYIIG KQFVTLQTTD GKQWQVLFYY  120
HNYTYSAMRL GKGWVTFLKD NNLEEGDVCV FEVIERKPIV LSVSIFHMVD HQSSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874307.16e-28uncharacterized protein LOC111986848
STRINGVIT_03s0063g01450.t017e-18(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-11related to vernalization1 1