PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11291-snap-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 345aa    MW: 38548 Da    PI: 5.6983
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11291-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11119160345
                                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                                 W  +E+ ll+++++++G g+W+ +++++g ++ + qc+++++
  maker-scaffold11291-snap-gene-0.13-mRNA-1 119 DWNVDEEMLLLEGIEMYGFGNWTEVSEHVG-TKRRSQCIDHYN 160
                                                5*****************************.9999*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002914.7E-1056101IPR000433Zinc finger, ZZ-type
PfamPF005693.7E-1060100IPR000433Zinc finger, ZZ-type
CDDcd023353.38E-2660108No hitNo description
PROSITE profilePS5013510.83560103IPR000433Zinc finger, ZZ-type
SuperFamilySSF578503.06E-1560122No hitNo description
PROSITE patternPS0135706289IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.05E-11114166IPR009057Homeodomain-like
PROSITE profilePS5129319.843115167IPR017884SANT domain
SMARTSM007171.4E-10116165IPR001005SANT/Myb domain
PfamPF002491.7E-11119160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-8119161IPR009057Homeodomain-like
CDDcd001672.94E-11120160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRSRAVSHL SEEDPNQRSK RKRPTTITTT TTTSNTSNAA SASNAETTET ATPTGKLALY  60
HCNYCNKDIS GRIRIKCVIC PDFDLCIECF SVGAEVTPHK SNHPYRVMDN LAFPLLCSDW  120
NVDEEMLLLE GIEMYGFGNW TEVSEHVGTK RRSQCIDHYN AVYMNSPCFP LPDMSHVMGK  180
SREELLAMSR AHGEVKKEIP NVGELTLKED SSFSARVRSD ESKEGPAWQS SSSLTSETGK  240
GLGSSSCNTF SSVIKKASNN SQIKDGIKTE EFQSDRSIGE KKPRVPGDEG PSMTELSGYN  300
FKRQEFEIEY DNDAEQILAD MEFKDTDSAA DRELKLRVLR IYSKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E6e-35601755120Transcriptional adapter 2
6cw3_G6e-35601755120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873221.10.0transcriptional adapter ADA2-like
RefseqXP_023873222.10.0transcriptional adapter ADA2-like
SwissprotQ75LL61e-138TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2I4FXD50.0A0A2I4FXD5_JUGRE; Transcriptional adapter
STRINGGorai.009G328200.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15371726
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]