PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11640-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CAMTA
Protein Properties Length: 96aa    MW: 11111.1 Da    PI: 9.988
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11640-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-160.24e-1926722974
                                          CG-1 29 elktrpksgsliLynrkkvryfrkDGysw.kkkkdgktvrEdhekLK 74
                                                  ++  + +sgs+ L+nrk +r frkDGy+w kkk+dgktv E hekLK
  maker-scaffold11640-augustus-gene-0.5-mRNA-1 26 HPVVELRSGSFCLFNRKELRCFRKDGYNWtKKKRDGKTVMEGHEKLK 72
                                                  5567789**********************55678************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010762.4E-4187IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143718.169196IPR005559CG-1 DNA-binding domain
PfamPF038597.3E-132672IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MATAACGVNT LCIIKSIIVL MACAEHPVVE LRSGSFCLFN RKELRCFRKD GYNWTKKKRD  60
GKTVMEGHEK LKGVTFVKRF FVLHNYLCRE NFTSFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901441.12e-17calmodulin-binding transcription activator 3-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.28e-15Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains