PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold11770-snap-gene-0.5-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C3H

Protein Properties

Length: 946aa MW: 104151 Da PI: 7.7855

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold11770-snap-gene-0.5-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.1e-08	175	197	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t lC++fa+ G C++G+ C+F H+ maker-scaffold11770-snap-gene-0.5-mRNA-1 175 TQLCKDFAA-GRCRRGNHCQFLHP 197 78*****.***********8 PP
2	zf-CCCH	19.7	1.5e-06	237	257	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f r G C++G++C++aH+ maker-scaffold11770-snap-gene-0.5-mRNA-1 237 YCTDFIR-GKCRRGASCRYAHD 257 599**.***********5 PP
3	zf-CCCH	20.4	9.1e-07	298	320	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ffa+ G C+ G C+F+H maker-scaffold11770-snap-gene-0.5-mRNA-1 298 EVPCKFFAA-GNCRNGKFCRFSHH 320 6899999.***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.319	172	199	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-5	174	197	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.2E-5	174	198	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.1E-7	175	196	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-5	175	197	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.892	232	259	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-4	232	258	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-4	237	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.54	295	322	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.5E-4	295	321	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-5	298	320	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-4	298	320	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence Send to blast
MSGSSRKRGS KWDLRGEDQF EDENVPVDCW PGKAGMSFHE EDSERRWLST EVAGSNHSKW 60 SDLENDLLEA KHDLEPLPRS SVSLRDGSFS KGRNRNLEAT VAWDGDGSYG MNMSPGLDEW 120 RGQSRSRSPK NGWSRSLRGR SRSRSRSRSR SRSPVRGIRR ESGFHDRSRS RGASTQLCKD 180 FAAGRCRRGN HCQFLHPGNQ HYEDNWESRH RKGGDSKYST PHDTRDYTSR MGRSIAYCTD 240 FIRGKCRRGA SCRYAHDGAS DSFSKGSAND VIRERENYRN RDLSFERGGE PEHRRVGEVP 300 CKFFAAGNCR NGKFCRFSHH TRAGVSPDGR SGDGDDRWGL RRHSVDIDRL RDGLKRSDTV 360 TVSDATKSED NDGQLSAPAQ RSTAWSRVDT RWSHSMDEGK RTGCDPKVGY KAAESNEKEG 420 NPWKEENAVA SNSVPESSGA EKWSGDMDMS PDWNYALPST NHVVKEEHGH FTQASQSFGS 480 YDTFAVTRGQ EITKEASVPM HDAAAVVQPI INEKSYFQQN HNLRDDGAIA LSCNDKSAIE 540 KTVSSSVDLN FSANVLPGQC FDQNGQSSSS LPLPNINQVV TPTASSRGGT TKYQQNLVFS 600 PKSLTKSNIG GASSSQVNPG ISPRQNTVSS EQLTHLTNLS ASLAQFFGNG PQLPQIYAAL 660 NSHSSVDVPC ISKSEGPLQP VSGAQVQQNP AIGSQQYDPI CDSIEPKKSD ISNNPSGISP 720 NPSGHKSSVD VKPEIPLKDM SPSPLPHKPN GSDFHRIGSS EEPNHKSQPS SQQETGENNE 780 VAMENNGVGA EESKKAQEGN QNAQEDGPFG NVDGDAEADD GKKSKDVKGI RAFKFALVEF 840 VKEILKPAWK EGQIGKDAYK TIVKKVVDKV TSTFQGANIP QTQEKIDYYL SSSKPKLTKL 900 VQLSSTYQIE PLWWLPVQCG CCCWLVGVNA ATPLLDVLPH TPTETN

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence Send to blast

MSGSSRKRGS KWDLRGEDQF EDENVPVDCW PGKAGMSFHE EDSERRWLST EVAGSNHSKW  60
SDLENDLLEA KHDLEPLPRS SVSLRDGSFS KGRNRNLEAT VAWDGDGSYG MNMSPGLDEW  120
RGQSRSRSPK NGWSRSLRGR SRSRSRSRSR SRSPVRGIRR ESGFHDRSRS RGASTQLCKD  180
FAAGRCRRGN HCQFLHPGNQ HYEDNWESRH RKGGDSKYST PHDTRDYTSR MGRSIAYCTD  240
FIRGKCRRGA SCRYAHDGAS DSFSKGSAND VIRERENYRN RDLSFERGGE PEHRRVGEVP  300
CKFFAAGNCR NGKFCRFSHH TRAGVSPDGR SGDGDDRWGL RRHSVDIDRL RDGLKRSDTV  360
TVSDATKSED NDGQLSAPAQ RSTAWSRVDT RWSHSMDEGK RTGCDPKVGY KAAESNEKEG  420
NPWKEENAVA SNSVPESSGA EKWSGDMDMS PDWNYALPST NHVVKEEHGH FTQASQSFGS  480
YDTFAVTRGQ EITKEASVPM HDAAAVVQPI INEKSYFQQN HNLRDDGAIA LSCNDKSAIE  540
KTVSSSVDLN FSANVLPGQC FDQNGQSSSS LPLPNINQVV TPTASSRGGT TKYQQNLVFS  600
PKSLTKSNIG GASSSQVNPG ISPRQNTVSS EQLTHLTNLS ASLAQFFGNG PQLPQIYAAL  660
NSHSSVDVPC ISKSEGPLQP VSGAQVQQNP AIGSQQYDPI CDSIEPKKSD ISNNPSGISP  720
NPSGHKSSVD VKPEIPLKDM SPSPLPHKPN GSDFHRIGSS EEPNHKSQPS SQQETGENNE  780
VAMENNGVGA EESKKAQEGN QNAQEDGPFG NVDGDAEADD GKKSKDVKGI RAFKFALVEF  840
VKEILKPAWK EGQIGKDAYK TIVKKVVDKV TSTFQGANIP QTQEKIDYYL SSSKPKLTKL  900
VQLSSTYQIE PLWWLPVQCG CCCWLVGVNA ATPLLDVLPH TPTETN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	151	RSRSRSRSRSR
2	143	151	RSRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023885183.1	0.0	zinc finger CCCH domain-containing protein 55
Refseq	XP_023885184.1	0.0	zinc finger CCCH domain-containing protein 55
TrEMBL	A0A2N9GG28	0.0	A0A2N9GG28_FAGSY; Uncharacterized protein
STRING	XP_008231642.1	0.0	(Prunus mume)
STRING	EMJ09602	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4099	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-10	C3H family protein